RLG00000015064

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019798
Physical Location & Seq
Reverse (-)
61136382 .. 61138005
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015064

Sequence Viewer

Length: 351 bp
ATGAGGATGACAATAATAATAATCAGTGAAGAATGTTGGAGTTTGTTTGTTTCTCTCCACGCGCGGAGGGGGGAGGTGGAGGGAAACGGTTGGGGTGATTGGAGGAGGAGAGAGACGCGCGGAGGAGAAGGCGGCTCCAAGTTCCAGGCTGCAGCTAGCTCATCATTAAATCGCCAGGAAGGGGGGATGGCTCTTCTGCTGCTGATTTGCGAGGGGCTGAGTGGCTTCGTTTCGACTATTTGGGATCTGCAAGAGATGCGTTTTGCAGCCGTTTTTGAAGATGTTAGCTTTCTTGCACTCACAGTCGTCTTGGCTGCATTATCCTGCTTCATTGCTACTAGGAGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.83

Weight (kDa)

5.82

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019798)

Species Orthologous Gene IDs
prunus_persica Prupe.8G145800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107991 RchiOBHm_Chr6g0252811
rosa_laevigata RLG00000015064
rosa_roxburghii Rroxscaffold_2G00135750 Rroxscaffold_7G00212410
rosa_samantha Rh2BG211400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 62, 64, 118, 120
AciI CCGC 3 cut(s) 64, 120, 132
AclWI GGATC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 2 cut(s) 144, 174
AluBI AGCT 3 cut(s) 155, 159, 288
AluI AGCT 3 cut(s) 155, 159, 288
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 252
ApeKI GCWGC 5 cut(s) 149, 152, 199, 266, 314
AspLEI GCGC 2 cut(s) 64, 120
AsuHPI GGTGA 1 cut(s) 107
AsuNHI GCTAGC 1 cut(s) 155
BbvI GCAGC 5 cut(s) 136, 164, 186, 278, 301
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 2 cut(s) 146, 176
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 2 cut(s) 156, 339
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 6 cut(s) 133, 150, 153, 200, 267, 315
BlsI GCNGC 6 cut(s) 134, 151, 154, 201, 268, 316
Bme1390I CCNGG 2 cut(s) 146, 176
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 146, 176
BmsI GCATC 1 cut(s) 246
BmtI GCTAGC 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 146, 176
BseGI GGATG 2 cut(s) 12, 192
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 209
BseRI GAGGAG 3 cut(s) 118, 121, 138
BseXI GCAGC 5 cut(s) 136, 164, 186, 278, 301
Bsh1236I CGCG 4 cut(s) 62, 64, 118, 120
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 107
BsmBI CGTCTC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 244, 344
BspACI CCGC 3 cut(s) 64, 120, 132
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 4 cut(s) 62, 64, 118, 120
BspLI GGNNCC 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 330
BssMI GATC 2 cut(s) 244, 344
Bst2UI CCWGG 2 cut(s) 146, 176
Bst4CI ACNGT 2 cut(s) 89, 304
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 12, 192
BstFNI CGCG 4 cut(s) 62, 64, 118, 120
BstHHI GCGC 2 cut(s) 64, 120
BstKTI GATC 2 cut(s) 247, 347
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 244, 344
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 2 cut(s) 146, 176
BstSCI CCNGG 2 cut(s) 144, 174
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 4 cut(s) 62, 64, 118, 120
BstV1I GCAGC 5 cut(s) 136, 164, 186, 278, 301
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsCI GGATG 2 cut(s) 12, 192
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 2 cut(s) 64, 120
CseI GACGC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 246, 346
DpnII GATC 2 cut(s) 244, 344
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 144, 174
Esp3I CGTCTC 1 cut(s) 107
FaiI YATR 1 cut(s) 349
Fnu4HI GCNGC 6 cut(s) 133, 150, 153, 200, 267, 315
FokI GGATG 2 cut(s) 19, 199
Fsp4HI GCNGC 6 cut(s) 133, 150, 153, 200, 267, 315
FspBI CTAG 2 cut(s) 156, 339
GlaI GCGC 2 cut(s) 63, 119
GluI GCNGC 6 cut(s) 133, 150, 153, 200, 267, 315
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 64, 120
Hin6I GCGC 2 cut(s) 62, 118
HinP1I GCGC 2 cut(s) 62, 118
HphI GGTGA 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 122, 173
HpyCH4III ACNGT 2 cut(s) 89, 304
HpyCH4V TGCA 5 cut(s) 152, 250, 266, 296, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 218
HspAI GCGC 2 cut(s) 62, 118
Kzo9I GATC 2 cut(s) 244, 344
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 131, 158, 161, 188, 337
Lsp1109I GCAGC 5 cut(s) 136, 164, 186, 278, 301
LweI GCATC 1 cut(s) 246
MaeI CTAG 2 cut(s) 156, 339
MalI GATC 2 cut(s) 246, 346
MboI GATC 2 cut(s) 244, 344
MboII GAAGA 3 cut(s) 41, 185, 290
MflI RGATCY 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 17
MnlI CCTC 7 cut(s) 60, 67, 73, 96, 99, 116, 205
MseI TTAA 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 146, 176
MvaI CCWGG 2 cut(s) 146, 176
MvnI CGCG 4 cut(s) 62, 64, 118, 120
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeII GATC 2 cut(s) 244, 344
NheI GCTAGC 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 198
PkrI GCNGC 6 cut(s) 134, 151, 154, 201, 268, 316
Psp6I CCWGG 2 cut(s) 144, 174
PspGI CCWGG 2 cut(s) 144, 174
PspN4I GGNNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 6 cut(s) 133, 150, 153, 200, 267, 315
Sau3AI GATC 2 cut(s) 244, 344
ScrFI CCNGG 2 cut(s) 146, 176
SetI ASST 4 cut(s) 78, 157, 161, 290
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 1 cut(s) 150
SsiI CCGC 3 cut(s) 64, 120, 132
SspMI CTAG 2 cut(s) 156, 339
StyD4I CCNGG 2 cut(s) 144, 174
TaaI ACNGT 2 cut(s) 89, 304
TaqI TCGA 1 cut(s) 233
TauI GCSGC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 31
TseI GCWGC 5 cut(s) 149, 152, 199, 266, 314
TspDTI ATGAA 1 cut(s) 319
TspRI CASTG 1 cut(s) 31
XspI CTAG 2 cut(s) 156, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.