Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0030694

Physical Location & Seq

Genomic Coordinates Reverse (-)

65862636 .. 65864228

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015424

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGACCATTGCAGGCCTCGCTCTGCTCATTCTCTCTATGGTTGTTATTTTCCTTAATGGCTTTGGTGTGGCTGTTTCGGGATTGTACATGTTCGGGATTCTTTTCCTCAAGTGGTGGGCATTACTGGTGATGGGGCAGCGGTTTGGTCCTTGTCGCTACAATTGGGGTGGGATATCGACGATTGTGGAGAGCGTAGGTGGAGCCCAGTTTGACCAGACTCAGGCTCCTTTTCTACTGCCTTCATTGGGGCTGGCAGCTTCAGGTCGTTGCTTCTGGCCTACTCTTATTGGCCGATGCCGGAAAGATGTAACGGCCGGCTGCAATGGAAATGGTGTGATTTCCGTGGTCGTTAGTGTCTCTGACTCTTTGGGAGATAGAAACTCCACCGCTCATTTCCGCAGCCTCTTTGTCGACTCCGGCTTCTTCGACGGCCTCGGGTTGGGTGGAGATGCCAAGAAGGAAGTGGTTGGGGATAAGAGGGCCGACAACGACGGCGGCGGCGACCACAAGCGTAGCAAAACTTCATGGATGGCTCATTGGAGTCTGAGCTTTCTCTCGATGGTCTCAAGAAGTCCATATTTCCTGATAAGCTGGCTGAGCTCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

204

Amino Acids

21.87

Weight (kDa)

8.76

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030694)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015424
rosa_roxburghii	Rroxscaffold_7G00194610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	5 cut(s)	142, 390, 400, 498, 501
AcoI	YGGCCR	2 cut(s)	292, 315
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	223, 248, 442
AflIII	ACRYGT	1 cut(s)	90
AluBI	AGCT	4 cut(s)	260, 552, 594, 603
AluI	AGCT	4 cut(s)	260, 552, 594, 603
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	2 cut(s)	364, 571
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	6 cut(s)	16, 278, 292, 315, 433, 483
ApeKI	GCWGC	4 cut(s)	139, 257, 321, 402
AspS9I	GGNCC	2 cut(s)	149, 483
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	208, 605
BarI	GAAGNNNNNNTAC	2 cut(s)	508, 540
Bbv12I	GWGCWC	1 cut(s)	605
BbvI	GCAGC	4 cut(s)	151, 269, 308, 414
BccI	CCATC	3 cut(s)	127, 526, 556
BceAI	ACGGC	3 cut(s)	330, 448, 511
BcoDI	GTCTC	2 cut(s)	364, 571
BisI	GCNGC	6 cut(s)	140, 258, 322, 403, 499, 502
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	6 cut(s)	141, 259, 323, 404, 500, 503
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	149, 483
BmiI	GGNNCC	2 cut(s)	205, 228
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	287, 442
BmuI	ACTGGG	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	95, 553
BsaI	GGTCTC	1 cut(s)	571
BsaJI	CCNNGG	2 cut(s)	345, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 248, 442
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	132, 208
Bse3DI	GCAATG	2 cut(s)	9, 331
BseDI	CCNNGG	2 cut(s)	345, 436
BseGI	GGATG	1 cut(s)	537
BseLI	CCNNNNNNNGG	3 cut(s)	223, 248, 442
BseMI	GCAATG	2 cut(s)	9, 331
BseMII	CTCAG	3 cut(s)	236, 539, 590
BseNI	ACTGG	2 cut(s)	132, 208
BseX3I	CGGCCG	1 cut(s)	315
BseXI	GCAGC	4 cut(s)	151, 269, 308, 414
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	6 cut(s)	18, 280, 294, 317, 435, 485
BsiEI	CGRYCG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	3 cut(s)	301, 318, 420
BslI	CCNNNNNNNGG	3 cut(s)	223, 248, 442
BsmAI	GTCTC	2 cut(s)	364, 571
BsnI	GGCC	6 cut(s)	18, 280, 294, 317, 435, 485
Bso31I	GGTCTC	1 cut(s)	571
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	208, 605
Bsp1407I	TGTACA	1 cut(s)	87
Bsp1720I	GCTNAGC	1 cut(s)	599
BspACI	CCGC	5 cut(s)	142, 390, 400, 498, 501
BspANI	GGCC	6 cut(s)	18, 280, 294, 317, 435, 485
BspCNI	CTCAG	3 cut(s)	235, 540, 591
BspLI	GGNNCC	2 cut(s)	205, 228
BspTNI	GGTCTC	1 cut(s)	571
BsrBI	CCGCTC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	9, 331
BsrFI	RCCGGY	1 cut(s)	317
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	132, 208
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	345, 436
BstAUI	TGTACA	1 cut(s)	87
BstC8I	GCNNGC	4 cut(s)	16, 255, 319, 596
BstDEI	CTNAG	3 cut(s)	222, 548, 599
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	537
BstMAI	GTCTC	2 cut(s)	364, 571
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 600
BstNSI	RCATGY	1 cut(s)	94
BstV1I	GCAGC	4 cut(s)	151, 269, 308, 414
BstZI	CGGCCG	1 cut(s)	315
BsuRI	GGCC	6 cut(s)	18, 280, 294, 317, 435, 485
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	537
Cac8I	GCNNGC	4 cut(s)	16, 255, 319, 596
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	149, 483
Csp6I	GTAC	1 cut(s)	88
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	2 cut(s)	91, 528
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	3 cut(s)	222, 548, 599
EaeI	YGGCCR	2 cut(s)	292, 315
EagI	CGGCCG	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	603
EclXI	CGGCCG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	208, 605
Eco31I	GGTCTC	1 cut(s)	571
Eco32I	GATATC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	149
Eco52I	CGGCCG	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	603
EcoRV	GATATC	1 cut(s)	177
EcoT38I	GRGCYC	2 cut(s)	208, 605
FaeI	CATG	2 cut(s)	94, 531
FaiI	YATR	4 cut(s)	41, 92, 529, 580
FatI	CATG	2 cut(s)	90, 527
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	6 cut(s)	140, 258, 322, 403, 499, 502
FokI	GGATG	1 cut(s)	544
FriOI	GRGCYC	2 cut(s)	208, 605
Fsp4HI	GCNGC	6 cut(s)	140, 258, 322, 403, 499, 502
GluI	GCNGC	6 cut(s)	140, 258, 322, 403, 499, 502
HaeIII	GGCC	6 cut(s)	18, 280, 294, 317, 435, 485
HapII	CCGG	3 cut(s)	301, 318, 420
Hin1II	CATG	2 cut(s)	94, 531
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	5 cut(s)	100, 220, 365, 416, 544
HpaII	CCGG	3 cut(s)	301, 318, 420
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	364, 549
Hpy188III	TCNNGA	5 cut(s)	81, 97, 559, 570, 586
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	3 cut(s)	184, 434, 497
HpyAV	CCTTC	2 cut(s)	252, 454
HpyCH4V	TGCA	2 cut(s)	14, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 600
HpyF3I	CTNAG	3 cut(s)	222, 548, 599
Hsp92II	CATG	2 cut(s)	94, 531
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	203, 232
Lsp1109I	GCAGC	4 cut(s)	151, 269, 308, 414
LweI	GCATC	2 cut(s)	287, 442
MaeIII	GTNAC	1 cut(s)	310
MbiI	CCGCTC	1 cut(s)	392
MboII	GAAGA	1 cut(s)	418
MfeI	CAATTG	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	208, 605
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	4 cut(s)	214, 359, 410, 553
MnlI	CCTC	5 cut(s)	29, 119, 416, 446, 474
MroNI	GCCGGC	1 cut(s)	317
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	3 cut(s)	301, 318, 420
MunI	CAATTG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	20, 600
NaeI	GCCGGC	1 cut(s)	319
NgoMIV	GCCGGC	1 cut(s)	317
NlaIII	CATG	2 cut(s)	94, 531
NlaIV	GGNNCC	2 cut(s)	205, 228
NspI	RCATGY	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	18
PciI	ACATGT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PdiI	GCCGGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	6 cut(s)	141, 259, 323, 404, 500, 503
PleI	GAGTC	4 cut(s)	214, 359, 410, 552
PpsI	GAGTC	4 cut(s)	214, 359, 410, 552
PscI	ACATGT	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	605
PspN4I	GGNNCC	2 cut(s)	205, 228
PspPI	GGNCC	2 cut(s)	149, 483
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	605
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	6 cut(s)	140, 258, 322, 403, 499, 502
Sau96I	GGNCC	2 cut(s)	149, 483
SchI	GAGTC	4 cut(s)	214, 359, 410, 553
SduI	GDGCHC	2 cut(s)	208, 605
SetI	ASST	6 cut(s)	202, 262, 268, 554, 596, 605
SfaNI	GCATC	2 cut(s)	287, 442
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	110, 568
SmoI	CTYRAG	2 cut(s)	110, 568
Sse9I	AATT	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	5 cut(s)	142, 390, 400, 498, 501
SstI	GAGCTC	1 cut(s)	605
StuI	AGGCCT	1 cut(s)	18
TaqI	TCGA	4 cut(s)	179, 414, 429, 560
TasI	AATT	1 cut(s)	163
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	2 cut(s)	501, 504
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	4 cut(s)	139, 257, 321, 402
TspDTI	ATGAA	2 cut(s)	234, 516
TspGWI	ACGGA	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	149
XceI	RCATGY	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.