Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0025339

Physical Location & Seq

Genomic Coordinates Forward (+)

12112100 .. 12113122

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017016

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGTATTATAGGGGGACTCGACCATTTGTATAAATTTGATTTCAGTGGAGACTGTGACCAGGAAGACGAAGACCAACCTTGGGTTATGCACCAAGCTTCAATTCTGGGTGCAATGGCCGCTTCAGGCGGGTATAATTATCGAGATGCCACTACTCATAAAAGCTCTTTCAAGGTGGATAGGCCTCTTTCTGTCAATTCCAACCCCAAGTCTTTTGTAAAGTCCAAGCCTTTGCTTCCTCATCGCCGAAACAGCACTGGCTCTATTGATGGTGCTGCTACTAGAGTTGCCTGTAAGGATAATACAGGAGTTCCTGGAAGAGTCCGAGTAGCTGTAAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

115

Amino Acids

12.42

Weight (kDa)

9.03

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025339)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017016
rosa_multiflora	Rmu_sc0000129.1_g000011 Rmu_sc0001355.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	120, 129
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	102, 172
AjnI	CCWGG	2 cut(s)	60, 313
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	3 cut(s)	98, 165, 332
AluI	AGCT	3 cut(s)	98, 165, 332
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	2 cut(s)	117, 182
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	72, 78
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	2 cut(s)	62, 315
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	120, 276
BlsI	GCNGC	2 cut(s)	121, 277
Bme1390I	CCNGG	2 cut(s)	62, 315
BmrFI	CCNGG	2 cut(s)	62, 315
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	2 cut(s)	72, 78
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	62, 315
BseDI	CCNNGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	2 cut(s)	119, 184
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	119, 184
BspACI	CCGC	2 cut(s)	120, 129
BspANI	GGCC	2 cut(s)	119, 184
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	62, 315
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 252
BstNI	CCWGG	2 cut(s)	62, 315
BstSCI	CCNGG	2 cut(s)	60, 313
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	2 cut(s)	72, 78
BsuRI	GGCC	2 cut(s)	119, 184
BtgZI	GCGATG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	52, 255
CviJI	RGCY	7 cut(s)	98, 119, 165, 184, 229, 261, 332
CviKI_1	RGCY	7 cut(s)	98, 119, 165, 184, 229, 261, 332
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	80
Eco147I	AGGCCT	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	108
EcoRII	CCWGG	2 cut(s)	60, 313
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
FaiI	YATR	5 cut(s)	11, 33, 89, 135, 159
FaqI	GGGAC	1 cut(s)	30
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	2 cut(s)	120, 276
Fsp4HI	GCNGC	2 cut(s)	120, 276
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	2 cut(s)	120, 276
HaeIII	GGCC	2 cut(s)	119, 184
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	2 cut(s)	18, 321
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	91, 113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 252
LpnPI	CCDG	9 cut(s)	47, 74, 92, 111, 243, 291, 300, 304, 327
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	56
MboII	GAAGA	3 cut(s)	77, 83, 330
MluCI	AATT	4 cut(s)	35, 102, 136, 196
MlyI	GAGTC	2 cut(s)	12, 330
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	2 cut(s)	195, 249
MspR9I	CCNGG	2 cut(s)	62, 315
MvaI	CCWGG	2 cut(s)	62, 315
MwoI	GCNNNNNNNGC	2 cut(s)	119, 252
NmuCI	GTSAC	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	121, 277
PleI	GAGTC	2 cut(s)	12, 329
PpsI	GAGTC	2 cut(s)	12, 329
Psp6I	CCWGG	2 cut(s)	60, 313
PspGI	CCWGG	2 cut(s)	60, 313
SatI	GCNGC	2 cut(s)	120, 276
SchI	GAGTC	2 cut(s)	12, 330
ScrFI	CCNGG	2 cut(s)	62, 315
SetI	ASST	5 cut(s)	82, 100, 167, 177, 334
SfaNI	GCATC	1 cut(s)	136
Sse9I	AATT	4 cut(s)	35, 102, 136, 196
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	2 cut(s)	120, 129
SspMI	CTAG	1 cut(s)	282
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	60, 313
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	21, 142
TasI	AATT	4 cut(s)	35, 102, 136, 196
TauI	GCSGC	1 cut(s)	122
TscAI	CASTG	2 cut(s)	52, 262
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	56
TspRI	CASTG	2 cut(s)	52, 262
XapI	RAATTY	1 cut(s)	35
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.