Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0030769

Physical Location & Seq

Genomic Coordinates Forward (+)

33927734 .. 33929361

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTGGCTTCTAAAACCCACCCTTGTCCATCTCTGATCTCATTCCCTCCTTCCCCAACACCCCGCAACCTCCCCAACACCCTCACCTTCTTCCGCCCCAAATGTCCACCGCACTCACACTCACTCTCAATCAAAGCCCAACACCCGGCTCATACCACTCCAGGTCAGCTTCGGGTAGACATTCTCTCCGAATCCCTACCCTTCATCCAGAAATTCCGAGGCAAAACCATCGTCGTCAAGTACAGCCGCCGCCATGAAGGACGAGACCCTCCAGGCCACCGTCGTCAGAGACCTCGTTCTCCTCGCCTGCGTCGGCCTCCGCCCCATCTTGGTCCACCGCGGCGGCCCCGAGATCAACCTCTGGCTCAAGCGCCTCAACATCGAGGTCAACTTCCACGACGGCCTTCGTGTCACCGACGCGCCCACTATGGAGATCGTCTCCATGGTCTTGGCCGGCAAAGTCAACAAGCATTTGGTCTCCCTGATCAACTGAGAAGGAGTCAAGGCCATCGGCCTCTGCTGCTTCGACGGCGAGCTCATCACCGCCCGCCCCGCCCCCAAAGCCGCCAAGTTAGGGTTTGTCGGCTAGGTGGCGCGCGTGGACCCAGCAATTCTCCGGTTGATCGTGGACGACAGCCACATTCCGGTGATTGCGTCGGAGTGGTAGAGGCTGTTGAGGTTGAAGGTGGCTTGGAAGTTTTCAGGGTCAGAAGAAGTGTAGAAGGCGGGCTTGGCGGTGGGGACGGTGGTGGTGGTGGTGGTGCTGCTGTTGGAGATTTGTCTGCGGTTTCGGCGATTTCAATTTGGAGGGCGAGGCATGGAGCAAGAGAAGGAGGCTTTGGGAGCGCGGGTTACGGAAGAAGAAGAGGAGAGGAGGAGAGAGATGCAATGTTACAACATTGGCCACTTTATTCAAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

308

Amino Acids

33.96

Weight (kDa)

11.75

Isoelectric Point (pI)

77.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030769)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018685
rosa_multiflora	Rmu_sc0001217.1_g000016

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	5 cut(s)	340, 420, 596, 598, 848
AcoI	YGGCCR	2 cut(s)	451, 902
AcsI	RAATTY	1 cut(s)	212
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	4 cut(s)	145, 329, 574, 644
AgsI	TTSAA	3 cut(s)	683, 801, 915
AjnI	CCWGG	2 cut(s)	160, 271
AjuI	GAANNNNNNNTTGG	4 cut(s)	714, 746, 822, 854
AluBI	AGCT	2 cut(s)	169, 536
AluI	AGCT	2 cut(s)	169, 536
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	4 cut(s)	258, 283, 443, 482
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	8 cut(s)	274, 314, 344, 401, 451, 505, 512, 902
ApeKI	GCWGC	2 cut(s)	520, 764
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspLEI	GCGC	5 cut(s)	373, 422, 596, 598, 848
AspS9I	GGNCC	3 cut(s)	332, 345, 602
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	76, 404, 533, 659
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	2 cut(s)	332, 602
BalI	TGGCCA	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	2 cut(s)	507, 751
BccI	CCATC	4 cut(s)	37, 236, 333, 516
BceAI	ACGGC	2 cut(s)	416, 545
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	162, 273
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	4 cut(s)	258, 283, 443, 482
BfaI	CTAG	1 cut(s)	587
BfoI	RGCGCY	1 cut(s)	374
BisI	GCNGC	7 cut(s)	247, 250, 341, 344, 521, 565, 765
BlsI	GCNGC	7 cut(s)	248, 251, 342, 345, 522, 566, 766
Bme1390I	CCNGG	3 cut(s)	146, 162, 273
Bme18I	GGWCC	2 cut(s)	332, 602
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	3 cut(s)	332, 345, 602
BmiI	GGNNCC	2 cut(s)	347, 604
BmrFI	CCNGG	3 cut(s)	146, 162, 273
BmsI	GCATC	1 cut(s)	874
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BpmI	CTGGAG	2 cut(s)	144, 255
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	146
BsaI	GGTCTC	3 cut(s)	258, 283, 482
BsaJI	CCNNGG	3 cut(s)	217, 338, 442
BsaWI	WCCGGW	2 cut(s)	616, 644
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 835, 865
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 329, 574, 644
Bse118I	RCCGGY	1 cut(s)	453
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	2 cut(s)	162, 273
BseDI	CCNNGG	3 cut(s)	217, 338, 442
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	4 cut(s)	145, 329, 574, 644
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	482
BsePI	GCGCGC	1 cut(s)	594
BseRI	GAGGAG	4 cut(s)	291, 882, 887, 890
BseXI	GCAGC	2 cut(s)	507, 751
BseYI	CCCAGC	1 cut(s)	605
Bsh1236I	CGCG	5 cut(s)	340, 420, 596, 598, 848
BshFI	GGCC	8 cut(s)	276, 316, 346, 403, 453, 507, 514, 904
BsiHKAI	GWGCWC	1 cut(s)	538
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	4 cut(s)	146, 454, 617, 645
BslFI	GGGAC	1 cut(s)	755
BslI	CCNNNNNNNGG	4 cut(s)	145, 329, 574, 644
BsmAI	GTCTC	4 cut(s)	258, 283, 443, 482
BsmBI	CGTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	755
BsnI	GGCC	8 cut(s)	276, 316, 346, 403, 453, 507, 514, 904
Bso31I	GGTCTC	3 cut(s)	258, 283, 482
BsoBI	CYCGRG	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp143I	GATC	5 cut(s)	36, 352, 433, 484, 622
Bsp19I	CCATGG	1 cut(s)	442
BspANI	GGCC	8 cut(s)	276, 316, 346, 403, 453, 507, 514, 904
BspCNI	CTCAG	1 cut(s)	483
BspFNI	CGCG	5 cut(s)	340, 420, 596, 598, 848
BspLI	GGNNCC	2 cut(s)	347, 604
BspTNI	GGTCTC	3 cut(s)	258, 283, 482
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	453
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	3 cut(s)	217, 338, 442
BssHII	GCGCGC	1 cut(s)	594
BssMI	GATC	5 cut(s)	36, 352, 433, 484, 622
BssT1I	CCWWGG	1 cut(s)	442
Bst2UI	CCWGG	2 cut(s)	162, 273
Bst4CI	ACNGT	2 cut(s)	281, 746
Bst6I	CTCTTC	1 cut(s)	859
BstC8I	GCNNGC	6 cut(s)	308, 455, 534, 548, 596, 728
BstDEI	CTNAG	1 cut(s)	491
BstDSI	CCRYGG	2 cut(s)	338, 442
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	5 cut(s)	340, 420, 596, 598, 848
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	5 cut(s)	373, 422, 596, 598, 848
BstKTI	GATC	5 cut(s)	39, 355, 436, 487, 625
BstMAI	GTCTC	4 cut(s)	258, 283, 443, 482
BstMBI	GATC	5 cut(s)	36, 352, 433, 484, 622
BstMWI	GCNNNNNNNGC	7 cut(s)	520, 529, 552, 561, 732, 791, 843
BstNI	CCWGG	2 cut(s)	162, 273
BstSCI	CCNGG	3 cut(s)	144, 160, 271
BstUI	CGCG	5 cut(s)	340, 420, 596, 598, 848
BstV1I	GCAGC	2 cut(s)	507, 751
BstXI	CCANNNNNNTGG	1 cut(s)	449
BsuRI	GGCC	8 cut(s)	276, 316, 346, 403, 453, 507, 514, 904
BtgI	CCRYGG	2 cut(s)	338, 442
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	6 cut(s)	308, 455, 534, 548, 596, 728
CfoI	GCGC	5 cut(s)	373, 422, 596, 598, 848
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	3 cut(s)	332, 345, 602
Cfr42I	CCGCGG	1 cut(s)	341
CseI	GACGC	3 cut(s)	299, 426, 643
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	254, 443, 818
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	491
DpnI	GATC	5 cut(s)	38, 354, 435, 486, 624
DpnII	GATC	5 cut(s)	36, 352, 433, 484, 622
EaeI	YGGCCR	2 cut(s)	451, 902
Eam1104I	CTCTTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	859
EciI	GGCGGA	2 cut(s)	83, 309
Ecl136II	GAGCTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	538
Eco31I	GGTCTC	3 cut(s)	258, 283, 482
Eco47I	GGWCC	2 cut(s)	332, 602
Eco53kI	GAGCTC	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	160, 271
EcoT14I	CCWWGG	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	922
EcoT38I	GRGCYC	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	442
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	3 cut(s)	257, 446, 821
FaiI	YATR	6 cut(s)	153, 255, 429, 444, 819, 922
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FaqI	GGGAC	1 cut(s)	755
FatI	CATG	3 cut(s)	253, 442, 817
FauI	CCCGC	5 cut(s)	71, 555, 560, 719, 841
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	7 cut(s)	247, 250, 341, 344, 521, 565, 765
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	538
Fsp4HI	GCNGC	7 cut(s)	247, 250, 341, 344, 521, 565, 765
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	5 cut(s)	372, 421, 595, 597, 847
GluI	GCNGC	7 cut(s)	247, 250, 341, 344, 521, 565, 765
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	2 cut(s)	144, 255
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	8 cut(s)	276, 316, 346, 403, 453, 507, 514, 904
HapII	CCGG	4 cut(s)	146, 454, 617, 645
HgaI	GACGC	3 cut(s)	299, 426, 643
HhaI	GCGC	5 cut(s)	373, 422, 596, 598, 848
Hin1II	CATG	3 cut(s)	257, 446, 821
Hin6I	GCGC	5 cut(s)	371, 420, 594, 596, 846
HinP1I	GCGC	5 cut(s)	371, 420, 594, 596, 846
HincII	GTYRAC	2 cut(s)	389, 464
HindII	GTYRAC	2 cut(s)	389, 464
HinfI	GANTC	2 cut(s)	191, 499
HpaII	CCGG	4 cut(s)	146, 454, 617, 645
HphI	GGTGA	4 cut(s)	76, 404, 533, 659
Hpy166II	GTNNAC	7 cut(s)	107, 178, 335, 389, 464, 602, 629
Hpy188I	TCNGA	6 cut(s)	36, 190, 218, 288, 659, 710
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	7 cut(s)	107, 178, 335, 389, 464, 602, 629
Hpy99I	CGWCG	7 cut(s)	236, 285, 315, 402, 420, 531, 659
HpyAV	CCTTC	9 cut(s)	60, 97, 211, 251, 414, 489, 677, 716, 824
HpyCH4III	ACNGT	2 cut(s)	281, 746
HpyCH4V	TGCA	2 cut(s)	887, 920
HpyF10VI	GCNNNNNNNGC	7 cut(s)	520, 529, 552, 561, 732, 791, 843
HpyF3I	CTNAG	1 cut(s)	491
Hsp92II	CATG	3 cut(s)	257, 446, 821
HspAI	GCGC	5 cut(s)	371, 420, 594, 596, 846
KroI	GCCGGC	1 cut(s)	453
KroNI	GCCGGC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	484
KspI	CCGCGG	1 cut(s)	341
Kzo9I	GATC	5 cut(s)	36, 352, 433, 484, 622
LmnI	GCTCC	2 cut(s)	821, 843
Lsp1109I	GCAGC	2 cut(s)	507, 751
LweI	GCATC	1 cut(s)	874
MaeI	CTAG	1 cut(s)	587
MaeIII	GTNAC	3 cut(s)	410, 851, 891
MalI	GATC	5 cut(s)	38, 354, 435, 486, 624
MboI	GATC	5 cut(s)	36, 352, 433, 484, 622
MboII	GAAGA	5 cut(s)	82, 723, 870, 873, 876
MhlI	GDGCHC	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	904
MluCI	AATT	3 cut(s)	212, 610, 801
MluNI	TGGCCA	1 cut(s)	904
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	2 cut(s)	637, 751
Mox20I	TGGCCA	1 cut(s)	904
Mph1103I	ATGCAT	1 cut(s)	922
MroNI	GCCGGC	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	904
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	904
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	4 cut(s)	146, 454, 617, 645
MspR9I	CCNGG	3 cut(s)	146, 162, 273
MvaI	CCWGG	2 cut(s)	162, 273
MvnI	CGCG	5 cut(s)	340, 420, 596, 598, 848
MwoI	GCNNNNNNNGC	7 cut(s)	520, 529, 552, 561, 732, 791, 843
NaeI	GCCGGC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	442
NdeII	GATC	5 cut(s)	36, 352, 433, 484, 622
NgoMIV	GCCGGC	1 cut(s)	453
NlaIII	CATG	3 cut(s)	257, 446, 821
NlaIV	GGNNCC	2 cut(s)	347, 604
NmuCI	GTSAC	1 cut(s)	410
NsiI	ATGCAT	1 cut(s)	922
PauI	GCGCGC	1 cut(s)	594
PdiI	GCCGGC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	7 cut(s)	248, 251, 342, 345, 522, 566, 766
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	160, 271
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	160, 271
PspN4I	GGNNCC	2 cut(s)	347, 604
PspPI	GGNCC	3 cut(s)	332, 345, 602
PteI	GCGCGC	1 cut(s)	594
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	538
SacII	CCGCGG	1 cut(s)	341
SatI	GCNGC	7 cut(s)	247, 250, 341, 344, 521, 565, 765
Sau3AI	GATC	5 cut(s)	36, 352, 433, 484, 622
Sau96I	GGNCC	3 cut(s)	332, 345, 602
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	3 cut(s)	146, 162, 273
SduI	GDGCHC	1 cut(s)	538
SfaNI	GCATC	1 cut(s)	874
Sfr303I	CCGCGG	1 cut(s)	341
SgrBI	CCGCGG	1 cut(s)	341
SinI	GGWCC	2 cut(s)	332, 602
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	212, 610, 801
SspMI	CTAG	1 cut(s)	587
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	3 cut(s)	144, 160, 271
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	281, 746
TaqI	TCGA	2 cut(s)	382, 526
TasI	AATT	3 cut(s)	212, 610, 801
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	5 cut(s)	249, 252, 343, 346, 567
TfiI	GAWTC	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	520, 764
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	193, 270
TspGWI	ACGGA	1 cut(s)	870
VpaK11BI	GGWCC	2 cut(s)	332, 602
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.