RLG00000018780

Pentatricopeptide repeat domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0024818
Physical Location & Seq
Reverse (-)
35987508 .. 35988021
514 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018780

Sequence Viewer

Length: 432 bp
ATGACTATTGCAAATGCATTGGTTGATGGGTACGGCAATTGTTGGAATGTGAATGCTTCGAAACAGGTTTTTGATGAGATGATTTGGAGGAGTGAGGTGAGATTGACTCTGCAGTCAGTTTCTTGGAAGCAATGGTGGAGGGAAGGTGGTGTGAGAAATTGTGAGCCTACGCAAAAGCACTATGCTTGCCTGGTTGATCTCCTTGGCCGAGCTGGTCTCATGGAAGAAGCAGTAGAACTTATTAAAGGTGTGCCAATTGCACCAGATGCCAATATTTGGGGTTCTTTGCTTGGGGCATGTCAAATCCATGGGAACATAAAGTTGGCGAGTTGGGCAGCAAAGTATCTATGTAAGTTAAAACCTGATCATTGTGGGTACTATACACTTTTGGCTTACATGTATATGCAGAAGCAGGGAGATGGGAAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

144

Amino Acids

16.14

Weight (kDa)

8.2

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024818)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0124091
rosa_laevigata RLG00000018780
rosa_multiflora Rmu_sc0008812.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 205
AfaI GTAC 2 cut(s) 32, 377
AfiI CCNNNNNNNGG 1 cut(s) 276
AflIII ACRYGT 1 cut(s) 396
AjnI CCWGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 221
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 59
BbvI GCAGC 1 cut(s) 347
BccI CCATC 2 cut(s) 20, 413
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 256
BplI GAGNNNNNCTC 4 cut(s) 91, 123, 201, 233
Bpu14I TTCGAA 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 202, 307
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 202, 307
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 59
Bsp143I GATC 2 cut(s) 196, 364
Bsp19I CCATGG 1 cut(s) 307
BspANI GGCC 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 202, 307
BssMI GATC 2 cut(s) 196, 364
BssT1I CCWWGG 2 cut(s) 202, 307
Bst2UI CCWGG 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 187
BstDSI CCRYGG 1 cut(s) 307
BstKTI GATC 2 cut(s) 199, 367
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 2 cut(s) 196, 364
BstMWI GCNNNNNNNGC 2 cut(s) 266, 332
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 2 cut(s) 300, 400
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 31, 376
CviAII CATG 4 cut(s) 220, 297, 308, 397
CviJI RGCY 4 cut(s) 166, 207, 212, 392
CviKI_1 RGCY 4 cut(s) 166, 207, 212, 392
CviQI GTAC 2 cut(s) 31, 376
DpnI GATC 2 cut(s) 198, 366
DpnII GATC 2 cut(s) 196, 364
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 202, 307
Eco31I GGTCTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 202, 307
EcoT22I ATGCAT 1 cut(s) 19
ErhI CCWWGG 2 cut(s) 202, 307
FaeI CATG 4 cut(s) 223, 300, 311, 400
FatI CATG 4 cut(s) 219, 296, 307, 396
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 4 cut(s) 223, 300, 311, 400
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 5 cut(s) 11, 17, 112, 260, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 332
Hsp92II CATG 4 cut(s) 223, 300, 311, 400
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 2 cut(s) 196, 364
LpnPI CCDG 7 cut(s) 50, 176, 198, 203, 276, 375, 398
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 256
MalI GATC 2 cut(s) 198, 366
MboI GATC 2 cut(s) 196, 364
MboII GAAGA 1 cut(s) 236
MfeI CAATTG 2 cut(s) 37, 255
MluCI AATT 3 cut(s) 37, 157, 255
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 3 cut(s) 81, 88, 132
Mph1103I ATGCAT 1 cut(s) 19
MseI TTAA 2 cut(s) 243, 356
MslI CAYNNNNRTG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 191
MunI CAATTG 2 cut(s) 37, 255
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 266, 332
NcoI CCATGG 1 cut(s) 307
NdeII GATC 2 cut(s) 196, 364
NlaIII CATG 4 cut(s) 223, 300, 311, 400
NmeAIII GCCGAG 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 2 cut(s) 300, 400
NspV TTCGAA 1 cut(s) 59
PciI ACATGT 1 cut(s) 396
PctI GAATGC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 276
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PscI ACATGT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PstI CTGCAG 1 cut(s) 114
RsaI GTAC 2 cut(s) 32, 377
RsaNI GTAC 2 cut(s) 31, 376
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 2 cut(s) 243, 356
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 196, 364
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 191
SetI ASST 6 cut(s) 69, 99, 148, 214, 250, 364
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 110
SfuI TTCGAA 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 3 cut(s) 37, 157, 255
SspI AATATT 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 2 cut(s) 202, 307
TaqI TCGA 1 cut(s) 59
TasI AATT 3 cut(s) 37, 157, 255
Tru1I TTAA 2 cut(s) 243, 356
Tru9I TTAA 2 cut(s) 243, 356
TseI GCWGC 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 276
XceI RCATGY 2 cut(s) 300, 400
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.