Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0022939

Physical Location & Seq

Genomic Coordinates Forward (+)

78987993 .. 78988508

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAACTTTCAAACCCTTTCATTGACTACTGTATATGGGGATGGGACAACCTACCTCGAACTGTTCTCATGTATTATGCAAACTTTATATCATTCCCAGAAGGATGCTTTCACACTGTCATCTGTAATGCACAAGAGTTCCGCAACACAACTGTGAATACTGACCTACATTTCATAACATGGGACAATCCTCCCAAGCAACATCCTCACCACCTCATCCTTGGAGATTTGCAAAGGATGATTAGCAGCAATGCTCCATTGGCAAGAAAGTTTTGCAAAGACGATCCAGTGGTTGACAAAATTGATTCTGAGCTATTATTTATGGGTCCAGGCATGCTTGTTCCTGGTGGTTGGTGCACAGGAAGAAGGGAAAATGGGTCTGATCCATGCTCTGTTATTGGTAATACCACAGTTCTCAGGCCTAGTCCTGGAGCAAAAAGGCTAGAACTTTTGATCAGCTCACTAATGTCAAAACGAGAATTTCCGACCAAAATAGTGCAAATGACAAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009826 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0015020 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0032989 GO:0034097 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0060560 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

172

Amino Acids

19.43

Weight (kDa)

6.94

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	1 - 80	1.4e-15	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022939)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000021874
rosa_multiflora	Rmu_sc0006806.1_g000025
rosa_samantha	Rh2AG612400 Rh2CG594000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	2 cut(s)	278, 377
AcsI	RAATTY	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	3 cut(s)	328, 343, 427
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	2 cut(s)	313, 459
AluI	AGCT	2 cut(s)	313, 459
Alw21I	GWGCWC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	355
AlwI	GGATC	2 cut(s)	278, 377
AoxI	GGCC	1 cut(s)	419
ApaLI	GTGCAC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	36
BciT130I	CCWGG	3 cut(s)	330, 345, 429
BclI	TGATCA	1 cut(s)	453
BfaI	CTAG	2 cut(s)	423, 443
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	3 cut(s)	330, 345, 429
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	3 cut(s)	330, 345, 429
BmsI	GCATC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	3 cut(s)	330, 345, 429
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	5 cut(s)	47, 110, 202, 216, 243
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	300, 430
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	359
BslFI	GGGAC	2 cut(s)	59, 197
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmFI	GGGAC	2 cut(s)	59, 197
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	3 cut(s)	283, 382, 453
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	2 cut(s)	301, 429
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	278, 377
BsrDI	GCAATG	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	283, 382, 453
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	3 cut(s)	330, 345, 429
Bst4CI	ACNGT	5 cut(s)	32, 64, 118, 154, 412
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	309, 416
BstF5I	GGATG	5 cut(s)	47, 110, 202, 216, 243
BstKTI	GATC	3 cut(s)	286, 385, 456
BstMBI	GATC	3 cut(s)	283, 382, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	3 cut(s)	330, 345, 429
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	3 cut(s)	328, 343, 427
BstSLI	GKGCMC	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	421
BtsCI	GGATG	5 cut(s)	47, 110, 202, 216, 243
BtsIMutI	CAGTG	2 cut(s)	114, 294
Cac8I	GCNNGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	4 cut(s)	70, 180, 334, 387
CviJI	RGCY	4 cut(s)	313, 421, 442, 459
CviKI_1	RGCY	4 cut(s)	313, 421, 442, 459
DdeI	CTNAG	2 cut(s)	309, 416
DpnI	GATC	3 cut(s)	285, 384, 455
DpnII	GATC	3 cut(s)	283, 382, 453
Eco130I	CCWWGG	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	328, 343, 427
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	4 cut(s)	73, 183, 337, 390
FaqI	GGGAC	2 cut(s)	59, 197
FatI	CATG	4 cut(s)	69, 179, 333, 386
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	5 cut(s)	54, 117, 189, 203, 250
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	2 cut(s)	423, 443
GluI	GCNGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	421
Hin1II	CATG	4 cut(s)	73, 183, 337, 390
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	305
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	295, 357
Hpy188I	TCNGA	3 cut(s)	310, 382, 486
Hpy8I	GTNNAC	2 cut(s)	295, 357
HpyAV	CCTTC	2 cut(s)	95, 360
HpyCH4III	ACNGT	5 cut(s)	32, 64, 118, 154, 412
HpyCH4V	TGCA	6 cut(s)	80, 131, 232, 276, 357, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	309, 416
Hsp92II	CATG	4 cut(s)	73, 183, 337, 390
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	283, 382, 453
LmnI	GCTCC	2 cut(s)	259, 431
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	2 cut(s)	423, 443
MalI	GATC	3 cut(s)	285, 384, 455
MboI	GATC	3 cut(s)	283, 382, 453
MboII	GAAGA	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	2 cut(s)	300, 479
MmeI	TCCRAC	1 cut(s)	509
MnlI	CCTC	4 cut(s)	66, 201, 216, 224
MseI	TTAA	1 cut(s)	514
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	3 cut(s)	330, 345, 429
MvaI	CCWGG	3 cut(s)	330, 345, 429
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	3 cut(s)	283, 382, 453
NlaIII	CATG	4 cut(s)	73, 183, 337, 390
NlaIV	GGNNCC	1 cut(s)	327
NspI	RCATGY	1 cut(s)	337
OliI	CACNNNNGTG	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	248
Psp6I	CCWGG	3 cut(s)	328, 343, 427
PspGI	CCWGG	3 cut(s)	328, 343, 427
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	514
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	3 cut(s)	283, 382, 453
Sau96I	GGNCC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	330, 345, 429
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	6 cut(s)	54, 58, 168, 216, 315, 461
SfaNI	GCATC	1 cut(s)	95
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	337
Sse9I	AATT	2 cut(s)	300, 479
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	2 cut(s)	423, 443
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	3 cut(s)	328, 343, 427
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	5 cut(s)	32, 64, 118, 154, 412
TaqI	TCGA	1 cut(s)	58
TasI	AATT	2 cut(s)	300, 479
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	514
Tru9I	TTAA	1 cut(s)	514
TscAI	CASTG	2 cut(s)	121, 294
TseI	GCWGC	1 cut(s)	246
TspDTI	ATGAA	2 cut(s)	10, 163
TspRI	CASTG	2 cut(s)	121, 294
VneI	GTGCAC	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	479
XceI	RCATGY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XspI	CTAG	2 cut(s)	423, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.