Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0024932

Physical Location & Seq

Genomic Coordinates Reverse (-)

37573527 .. 37574231

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTGGTCTATGATTACATGGAAAATGGAAGCTTGGATGCTTATTTGTTTGATGAGCCGAAATGGGTGTTGAGTTGGGAACAGAGGTTTGGGATTATAAAGGGGATTGCTTCTGCGCTTCATTATCTACACAAAGGGTTTGAGCAGGTTGTGGTTCACAGAGATGTCAAGGCCAACAATGTGTTGCTGGATGGTGAAATGAATGGGAGGCTTGGGGATTTTGGGTTGGCTGGCTGCATGAACACGGGTCCAACTCGAATACGACTCGGGTCGTGGGTATGCTCGGGTATTAGCTTCCGGAGTTGCCCAAAACCAAGAAGGCGAGTACGGGGTTCGAATGTGTATAATGAGGGGAAGGTACTTGACGTGGTGGATCCTAGGCTTGATGGGGTTTATGATGAGAGGGAGGTGGTGATGGTTGTGAAGTTGGGGTTGATGTGTTCGGCCTATGGGCTGAGGGCGAGGCCCAATATGAGGCTGCTGGTGAGGTATTTGGATGCGGAGGTTGAGGTTCCAGAGGAGGTGAGACCGCCGAGTGGGTCCCATGTGGCCGGGTTTGATGACTTTGTGAGCTGCGTTTGCGTCGTCTTCTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

200

Amino Acids

22.4

Weight (kDa)

6.43

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 80	1.3e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 84	2.7e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024932)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465691
rosa_laevigata	RLG00000024625
rosa_samantha	Rh3CG144900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	136
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	2 cut(s)	500, 530
AclWI	GGATC	2 cut(s)	368, 381
AcoI	YGGCCR	1 cut(s)	549
AfaI	GTAC	2 cut(s)	327, 360
AfiI	CCNNNNNNNGG	2 cut(s)	474, 536
AjiI	CACGTC	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	3 cut(s)	33, 294, 573
AluI	AGCT	3 cut(s)	33, 294, 573
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	2 cut(s)	368, 381
Ama87I	CYCGRG	2 cut(s)	266, 283
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	4 cut(s)	171, 444, 464, 549
ApeKI	GCWGC	3 cut(s)	234, 478, 573
AspA2I	CCTAGG	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	3 cut(s)	248, 465, 540
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	4 cut(s)	206, 424, 496, 535
AsuII	TTCGAA	1 cut(s)	335
AvaI	CYCGRG	2 cut(s)	266, 283
AvaII	GGWCC	2 cut(s)	248, 540
AvrII	CCTAGG	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	580
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	221, 465, 560
BccI	CCATC	3 cut(s)	185, 380, 409
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	3 cut(s)	235, 479, 574
BlnI	CCTAGG	1 cut(s)	377
BlsI	GCNGC	3 cut(s)	236, 480, 575
Bme1390I	CCNGG	1 cut(s)	553
Bme18I	GGWCC	2 cut(s)	248, 540
BmeT110I	CYCGRG	2 cut(s)	266, 283
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	3 cut(s)	248, 465, 540
BmiI	GGNNCC	5 cut(s)	249, 375, 513, 541, 542
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	2 cut(s)	28, 487
BoxI	GACNNNNGTC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	580
Bpu10I	CCTNAGC	1 cut(s)	455
Bpu14I	TTCGAA	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	474, 536
BseAI	TCCGGA	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	3 cut(s)	43, 196, 502
BseLI	CCNNNNNNNGG	2 cut(s)	474, 536
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	3 cut(s)	221, 465, 560
BshFI	GGCC	4 cut(s)	173, 446, 466, 551
BsiHKCI	CYCGRG	2 cut(s)	266, 283
BsiSI	CCGG	2 cut(s)	298, 552
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	2 cut(s)	474, 536
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	4 cut(s)	173, 446, 466, 551
Bso31I	GGTCTC	1 cut(s)	520
BsoBI	CYCGRG	2 cut(s)	266, 283
Bsp119I	TTCGAA	1 cut(s)	335
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	2 cut(s)	500, 530
BspANI	GGCC	4 cut(s)	173, 446, 466, 551
BspCNI	CTCAG	1 cut(s)	447
BspEI	TCCGGA	1 cut(s)	297
BspLI	GGNNCC	5 cut(s)	249, 375, 513, 541, 542
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	368, 381
BspT104I	TTCGAA	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	377
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	43, 196, 502
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstPAI	GACNNNNGTC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	551
BstV1I	GCAGC	3 cut(s)	221, 465, 560
BstV2I	GAAGAC	1 cut(s)	580
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	4 cut(s)	173, 446, 466, 551
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	43, 196, 502
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	232
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	3 cut(s)	248, 465, 540
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	326, 359
CviAII	CATG	3 cut(s)	19, 238, 545
CviQI	GTAC	2 cut(s)	326, 359
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	549
Eco130I	CCWWGG	1 cut(s)	377
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	248, 540
Eco88I	CYCGRG	2 cut(s)	266, 283
EcoO109I	RGGNCCY	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	3 cut(s)	22, 241, 548
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	3 cut(s)	18, 237, 544
Fnu4HI	GCNGC	3 cut(s)	235, 479, 574
FokI	GGATG	3 cut(s)	50, 203, 509
Fsp4HI	GCNGC	3 cut(s)	235, 479, 574
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	3 cut(s)	235, 479, 574
HaeIII	GGCC	4 cut(s)	173, 446, 466, 551
HapII	CCGG	2 cut(s)	298, 552
HgaI	GACGC	1 cut(s)	571
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	22, 241, 548
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	2 cut(s)	298, 552
HphI	GGTGA	4 cut(s)	206, 424, 496, 535
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	599
Hpy188III	TCNNGA	2 cut(s)	298, 515
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	2 cut(s)	312, 349
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpyF3I	CTNAG	1 cut(s)	455
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	22, 241, 548
HspAI	GCGC	1 cut(s)	116
KflI	GGGWCCC	1 cut(s)	540
Kpn2I	TCCGGA	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	373
LpnPI	CCDG	7 cut(s)	131, 173, 216, 311, 467, 528, 565
Lsp1109I	GCAGC	3 cut(s)	221, 465, 560
LweI	GCATC	2 cut(s)	28, 487
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	366
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	1 cut(s)	580
MflI	RGATCY	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	275
MroI	TCCGGA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	2 cut(s)	298, 552
MspR9I	CCNGG	1 cut(s)	553
MwoI	GCNNNNNNNGC	1 cut(s)	579
NciI	CCSGG	1 cut(s)	553
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	22, 241, 548
NlaIV	GGNNCC	5 cut(s)	249, 375, 513, 541, 542
NmeAIII	GCCGAG	1 cut(s)	558
NspV	TTCGAA	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	236, 480, 575
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PpuMI	RGGWCCY	1 cut(s)	540
PshAI	GACNNNNGTC	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	540
PspN4I	GGNNCC	5 cut(s)	249, 375, 513, 541, 542
PspPI	GGNCC	3 cut(s)	248, 465, 540
PspPPI	RGGWCCY	1 cut(s)	540
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	2 cut(s)	327, 360
RsaNI	GTAC	2 cut(s)	326, 359
RseI	CAYNNNNRTG	1 cut(s)	162
SatI	GCNGC	3 cut(s)	235, 479, 574
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	3 cut(s)	248, 465, 540
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	553
SfaNI	GCATC	2 cut(s)	28, 487
SfuI	TTCGAA	1 cut(s)	335
SinI	GGWCC	2 cut(s)	248, 540
SmiMI	CAYNNNNRTG	1 cut(s)	162
SsiI	CCGC	2 cut(s)	500, 530
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	1 cut(s)	377
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	256, 335
TseI	GCWGC	3 cut(s)	234, 478, 573
TspDTI	ATGAA	3 cut(s)	110, 215, 254
VpaK11BI	GGWCC	2 cut(s)	248, 540
XmaJI	CCTAGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.