Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0030856

Physical Location & Seq

Genomic Coordinates Reverse (-)

17714870 .. 17716266

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028015

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGACCATGGAGGAAGAGCCATGCCTCGTCTCTGCAGATTGAACATTGATCATTGTCAAGGATTGAGGGCACTTCCAAATGGGATTCAATATATTACTACCCTTAAGGAATTAGTACTCCAGCAGATGCCTATTGAATTCTGCAATACGCTTGACGAAGGAGGAGAAGATTTCTACAAAATCAAACATGTGCCTTCTATAAACCCTAAATCATTATGTCCCAACAGGGGAGACGCGAACCCCTATCTCCTTCTCCGGGCGTATGTGGTTCCACACCAGTTCTTTATAAGCCAAACCACAGCGAAAACCTGTTCTAGTCTATCACTCCTGAAGGCTGGTTCACCCTCTCCGGCTCCAATGATGCGATGGTGTGGCAAAGGGAAAACTGGTGGAAAGGAAGGCTTTATTGGCAAGTATGGACAATCACTCATATATATTCGACTACAACACGTCAAATTTGTTGTTCTCCACAGAGCCTATTGCCCTCCATGTCTCAACAAGCTTCTCTTCACCACCAAGAATCCATTCTCGTTTGCTTTCGACTCCTTGTTCATTCTATGCACTTCTCTAGCTCTGGCTTTGTCCCTATTCGTCGCCCATGTTGACTCGGCCTCTGCTATAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

209

Amino Acids

23.01

Weight (kDa)

9.27

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030856)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000028015
rosa_samantha	Rh6AG197100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccII	CGCG	1 cut(s)	236
AcsI	RAATTY	2 cut(s)	137, 455
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	227, 256
AflII	CTTAAG	1 cut(s)	104
AflIII	ACRYGT	2 cut(s)	187, 448
AgsI	TTSAA	3 cut(s)	43, 89, 137
AjiI	CACGTC	1 cut(s)	451
AjuI	GAANNNNNNNTTGG	4 cut(s)	390, 422, 509, 541
AluBI	AGCT	2 cut(s)	502, 572
AluI	AGCT	2 cut(s)	502, 572
Alw26I	GTCTC	3 cut(s)	35, 225, 497
AoxI	GGCC	1 cut(s)	609
ApoI	RAATTY	2 cut(s)	137, 455
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	333, 502
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	73
BccI	CCATC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	3 cut(s)	35, 225, 497
BfaI	CTAG	3 cut(s)	315, 569, 625
BfmI	CTRYAG	2 cut(s)	34, 618
BfrI	CTTAAG	1 cut(s)	104
BmcAI	AGTACT	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	270, 354
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	2 cut(s)	117, 351
BpmI	CTGGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 256
Bse1I	ACTGG	2 cut(s)	277, 391
BseDI	CCNNGG	1 cut(s)	7
BseLI	CCNNNNNNNGG	2 cut(s)	227, 256
BseNI	ACTGG	2 cut(s)	277, 391
BseRI	GAGGAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	611
BsiSI	CCGG	2 cut(s)	256, 350
BslFI	GGGAC	2 cut(s)	204, 568
BslI	CCNNNNNNNGG	2 cut(s)	227, 256
BsmAI	GTCTC	3 cut(s)	35, 225, 497
BsmBI	CGTCTC	2 cut(s)	35, 225
BsmFI	GGGAC	2 cut(s)	204, 568
BsnI	GGCC	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	7
BspANI	GGCC	1 cut(s)	611
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	2 cut(s)	270, 354
BspMAI	CTGCAG	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	277, 391
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	7
Bst6I	CTCTTC	2 cut(s)	10, 512
BstAFI	CTTAAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	7
BstFNI	CGCG	1 cut(s)	236
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	3 cut(s)	35, 225, 497
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	34, 618
BstSLI	GKGCMC	1 cut(s)	73
BstUI	CGCG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	611
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	379
BtrI	CACGTC	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	5 cut(s)	8, 22, 188, 489, 599
CviQI	GTAC	1 cut(s)	116
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	10, 512
EarI	CTCTTC	2 cut(s)	10, 512
Eco130I	CCWWGG	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
Esp3I	CGTCTC	2 cut(s)	35, 225
FaeI	CATG	5 cut(s)	11, 25, 191, 492, 602
FalI	AAGNNNNNCTT	4 cut(s)	386, 418, 491, 523
FaqI	GGGAC	2 cut(s)	204, 568
FatI	CATG	5 cut(s)	7, 21, 187, 488, 598
FbaI	TGATCA	1 cut(s)	49
FspBI	CTAG	3 cut(s)	315, 569, 625
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	611
HapII	CCGG	2 cut(s)	256, 350
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	5 cut(s)	11, 25, 191, 492, 602
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	4 cut(s)	85, 520, 542, 605
HpaII	CCGG	2 cut(s)	256, 350
HphI	GGTGA	2 cut(s)	333, 502
Hpy166II	GTNNAC	2 cut(s)	341, 604
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	2 cut(s)	341, 604
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	5 cut(s)	152, 204, 260, 325, 392
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	36, 144, 561
HpyF10VI	GCNNNNNNNGC	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	5 cut(s)	11, 25, 191, 492, 602
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	49
LguI	GCTCTTC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	358
LweI	GCATC	2 cut(s)	117, 351
MaeI	CTAG	3 cut(s)	315, 569, 625
MaeII	ACGT	1 cut(s)	450
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	27, 179, 499
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	3 cut(s)	110, 137, 455
MlyI	GAGTC	2 cut(s)	536, 599
MnlI	CCTC	7 cut(s)	5, 36, 60, 155, 355, 495, 622
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	1 cut(s)	105
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	2 cut(s)	256, 350
MspR9I	CCNGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	408
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	5 cut(s)	11, 25, 191, 492, 602
NlaIV	GGNNCC	2 cut(s)	270, 354
NmeAIII	GCCGAG	1 cut(s)	587
NspI	RCATGY	1 cut(s)	191
PciI	ACATGT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	85, 520
PleI	GAGTC	2 cut(s)	536, 599
PpsI	GAGTC	2 cut(s)	536, 599
PscI	ACATGT	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	270, 354
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	117
SchI	GAGTC	2 cut(s)	536, 599
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	4 cut(s)	311, 453, 504, 574
SfaNI	GCATC	2 cut(s)	117, 351
SfcI	CTRYAG	2 cut(s)	34, 618
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	110, 137, 455
SspMI	CTAG	3 cut(s)	315, 569, 625
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	7
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	439, 540
TasI	AATT	3 cut(s)	110, 137, 455
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	85, 520
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TspDTI	ATGAA	1 cut(s)	541
Vha464I	CTTAAG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	137, 455
XceI	RCATGY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	3 cut(s)	315, 569, 625
ZrmI	AGTACT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.