RLG00000029327
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0025400
Physical Location & Seq
Reverse (-)
36592906 .. 36594340
1435 bp
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UTR
Exon/CDS
Intron
RLM00000029327

Sequence Viewer

Length: 342 bp
ATGACTAACAAGAAATCTCAGTTTTACCTAATTTATGAAGACTTCGACGCAACAACTCGGAGACCAGAGGAATATGCTATCGTCATCGCAATTCAGCCTCGCTTTGGTGTCGATCGACCAATTGGGACATGGTCGATCCCTTCGCGACGAAGCAGAAGACCAGTCGGAGATCCCATCGCCAATTTGGTCAAAGGCATTGTAAACAGAAGGCCAATAAGCTCCAAAGCAAGGCCTCACTGTGACATGGAGGTGCCGGGACAAGAAGAACAACAATTCAAGGTCACTTGTGACTGGGCCACAATGCCGCCGTTACTCAAGTTCTTGAACGGTGATATCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

114

Amino Acids

12.99

Weight (kDa)

9.34

Isoelectric Point (pI)

69.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025400)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029327 RLG00000032270
rosa_multiflora Rmu_sc0003630.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccII CGCG 1 cut(s) 145
AciI CCGC 1 cut(s) 305
AclWI GGATC 2 cut(s) 130, 164
AfiI CCNNNNNNNGG 2 cut(s) 104, 228
AgsI TTSAA 2 cut(s) 277, 325
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 2 cut(s) 130, 164
AoxI GGCC 3 cut(s) 209, 230, 294
AspS9I GGNCC 1 cut(s) 294
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 341
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 45, 163
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 292
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 55
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 255
BmrI ACTGGG 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 2 cut(s) 45, 163
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 228
Bse1I ACTGG 2 cut(s) 161, 296
BseLI CCNNNNNNNGG 2 cut(s) 104, 228
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 2 cut(s) 161, 296
Bsh1236I CGCG 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 3 cut(s) 211, 232, 296
BshNI GGYRCC 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 115
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 2 cut(s) 139, 270
BslI CCNNNNNNNGG 2 cut(s) 104, 228
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 139, 270
BsnI GGCC 3 cut(s) 211, 232, 296
Bso31I GGTCTC 1 cut(s) 55
Bsp143I GATC 3 cut(s) 112, 135, 169
Bsp68I TCGCGA 1 cut(s) 145
BspACI CCGC 1 cut(s) 305
BspANI GGCC 3 cut(s) 211, 232, 296
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 2 cut(s) 130, 164
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 161, 296
BssMI GATC 3 cut(s) 112, 135, 169
Bst4CI ACNGT 2 cut(s) 239, 329
BstDEI CTNAG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 145
BstKTI GATC 3 cut(s) 115, 138, 172
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 3 cut(s) 112, 135, 169
BstMCI CGRYCG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 253
BstUI CGCG 1 cut(s) 145
BstV2I GAAGAC 2 cut(s) 45, 163
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 3 cut(s) 211, 232, 296
BtgZI GCGATG 2 cut(s) 70, 160
BtsIMutI CAGTG 1 cut(s) 235
BtuMI TCGCGA 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 294
CseI GACGC 1 cut(s) 56
CviAII CATG 2 cut(s) 129, 244
CviJI RGCY 5 cut(s) 97, 211, 219, 232, 296
CviKI_1 RGCY 5 cut(s) 97, 211, 219, 232, 296
DdeI CTNAG 1 cut(s) 18
DpnI GATC 3 cut(s) 114, 137, 171
DpnII GATC 3 cut(s) 112, 135, 169
Eco147I AGGCCT 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 334
EcoRV GATATC 1 cut(s) 334
FaeI CATG 2 cut(s) 132, 247
FaiI YATR 4 cut(s) 36, 75, 130, 245
FaqI GGGAC 2 cut(s) 139, 270
FatI CATG 2 cut(s) 128, 243
Fnu4HI GCNGC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 305
GluI GCNGC 1 cut(s) 305
HaeIII GGCC 3 cut(s) 211, 232, 296
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 56
Hin1II CATG 2 cut(s) 132, 247
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 60, 167
Hpy188III TCNNGA 2 cut(s) 144, 322
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 2 cut(s) 50, 150
HpyAV CCTTC 2 cut(s) 150, 201
HpyCH4III ACNGT 2 cut(s) 239, 329
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 2 cut(s) 132, 247
Kzo9I GATC 3 cut(s) 112, 135, 169
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 4 cut(s) 78, 174, 267, 277
MaeIII GTNAC 4 cut(s) 239, 280, 287, 309
MalI GATC 3 cut(s) 114, 137, 171
MboI GATC 3 cut(s) 112, 135, 169
MboII GAAGA 3 cut(s) 50, 168, 275
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 169
MluCI AATT 5 cut(s) 30, 90, 120, 181, 272
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 4 cut(s) 61, 108, 241, 243
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 255
MunI CAATTG 1 cut(s) 120
MvnI CGCG 1 cut(s) 145
NciI CCSGG 1 cut(s) 255
NdeII GATC 3 cut(s) 112, 135, 169
NlaIII CATG 2 cut(s) 132, 247
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 3 cut(s) 239, 280, 287
NruI TCGCGA 1 cut(s) 145
PceI AGGCCT 1 cut(s) 232
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 306
Ple19I CGATCG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 294
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 130
PvuI CGATCG 1 cut(s) 115
RruI TCGCGA 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 248
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 3 cut(s) 112, 135, 169
Sau96I GGNCC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 255
SetI ASST 4 cut(s) 30, 221, 252, 282
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 5 cut(s) 30, 90, 120, 181, 272
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 1 cut(s) 305
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 239, 329
TaqI TCGA 4 cut(s) 45, 111, 115, 134
TasI AATT 5 cut(s) 30, 90, 120, 181, 272
TauI GCSGC 1 cut(s) 307
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 3 cut(s) 239, 280, 287
Tsp45I GTSAC 3 cut(s) 239, 280, 287
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 1 cut(s) 242
Tth111I GACNNNGTC 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 2 cut(s) 126, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.