RLG00000029864

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0030897
Physical Location & Seq
Forward (+)
50352929 .. 50354633
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029864

Sequence Viewer

Length: 663 bp
ATGATAATGGCTGCGATATACGACATGTTTCCAATCTGCAATGGGTGGCGGCGGCTGACGTTTATGGTGGCTCTAGGGCCGTTGGGATCGAGACCAGGTATAGTGAACTTGATGGTGGTGGTCCAAGGTTGGATCGGCCATGGCTGGTTATTTTGCCAGTGGCCCCATGTTTCGGTGGCAGTATGGCAAAATAGATCGCTAGGATGGTCGACTGGATTCTTTGGAGGCAAAGGAGGCAGGCTTGGTACGGCGGAGGCTGCAAAAGGACTTTTGGTGGCCTCCCCAGATACGGATCCACGACAGCCATCCTATCCTCCCAAAGCTTGCCTTTGTCAATGCTACAACCGCCTGATTCACTCACGATTCCATCGTCTCCTTCGGTTACCCAAACAACCGGTGTCGAGCCTCATCGCTCAATCAGCAGGGGATTGGAGACTTTTGCCTCCCTGCAACTCGAAGCCCAAATCCACAACCAGCGCTGCAAATCCAGACCCGACTCGCCTTGCCTTCAAACCCGACACAGGAAGAACCCCTGTCGCTACACACGCTCGACGCATACCAGACGAGATCGATGTCGGAAGACGTCCTTTAGCAGGCAGTGAACGAAACCGACACTGCCGCACTGCTGCACGAAACCCTAGGTTTCGGTATGCAGAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.44

Weight (kDa)

10.68

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030897)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029864
rosa_multiflora Rmu_sc0004571.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 586
AccI GTMKAC 1 cut(s) 209
AciI CCGC 5 cut(s) 49, 52, 251, 346, 619
AclWI GGATC 4 cut(s) 94, 140, 287, 300
AcoI YGGCCR 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 583
AfaI GTAC 1 cut(s) 247
AfeI AGCGCT 1 cut(s) 478
AfiI CCNNNNNNNGG 4 cut(s) 172, 289, 521, 593
AflIII ACRYGT 1 cut(s) 24
AgeI ACCGGT 1 cut(s) 394
AgsI TTSAA 1 cut(s) 511
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 323, 658
AluI AGCT 2 cut(s) 323, 658
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 3 cut(s) 85, 377, 427
AlwI GGATC 4 cut(s) 94, 140, 287, 300
Aor51HI AGCGCT 1 cut(s) 478
AoxI GGCC 4 cut(s) 77, 136, 161, 276
ApeKI GCWGC 4 cut(s) 11, 257, 479, 626
AsiGI ACCGGT 1 cut(s) 394
AspA2I CCTAGG 1 cut(s) 638
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 77, 121, 162
AvaII GGWCC 1 cut(s) 121
AvrII CCTAGG 1 cut(s) 638
BamHI GGATCC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 660
BbsI GAAGAC 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 660
BbvI GCAGC 3 cut(s) 244, 466, 613
BccI CCATC 4 cut(s) 106, 198, 313, 375
BceAI ACGGC 2 cut(s) 64, 264
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 3 cut(s) 85, 377, 427
BfaI CTAG 3 cut(s) 74, 200, 639
BfoI RGCGCY 1 cut(s) 480
BisI GCNGC 7 cut(s) 12, 50, 53, 258, 480, 619, 627
BlnI CCTAGG 1 cut(s) 638
BlsI GCNGC 7 cut(s) 13, 51, 54, 259, 481, 620, 628
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 77, 121, 162
BmiI GGNNCC 2 cut(s) 164, 294
BmrFI CCNGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 586
Bsa29I ATCGAT 1 cut(s) 570
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 583
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 124, 139, 638
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 289, 521, 593
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 2 cut(s) 157, 217
Bse3DI GCAATG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 124, 139, 638
BseGI GGATG 2 cut(s) 209, 305
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 4 cut(s) 172, 289, 521, 593
BseMI GCAATG 1 cut(s) 46
BseNI ACTGG 2 cut(s) 157, 217
BseXI GCAGC 3 cut(s) 244, 466, 613
BsgI GTGCAG 1 cut(s) 612
BshFI GGCC 4 cut(s) 79, 138, 163, 278
BshTI ACCGGT 1 cut(s) 394
BshVI ATCGAT 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 660
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 4 cut(s) 172, 289, 521, 593
BsmAI GTCTC 3 cut(s) 85, 377, 427
BsmBI CGTCTC 1 cut(s) 377
BsnI GGCC 4 cut(s) 79, 138, 163, 278
Bso31I GGTCTC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 5 cut(s) 86, 132, 194, 292, 567
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 5 cut(s) 49, 52, 251, 346, 619
BspANI GGCC 4 cut(s) 79, 138, 163, 278
BspDI ATCGAT 1 cut(s) 570
BspLI GGNNCC 2 cut(s) 164, 294
BspPI GGATC 4 cut(s) 94, 140, 287, 300
BspTNI GGTCTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 2 cut(s) 157, 217
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 3 cut(s) 124, 139, 638
BssMI GATC 5 cut(s) 86, 132, 194, 292, 567
BssNI GRCGYC 1 cut(s) 583
BssT1I CCWWGG 3 cut(s) 124, 139, 638
Bst2UI CCWGG 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 583
BstC8I GCNNGC 3 cut(s) 239, 325, 595
BstDSI CCRYGG 1 cut(s) 139
BstEII GGTNACC 1 cut(s) 381
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 209, 305
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 5 cut(s) 89, 135, 197, 295, 570
BstMAI GTCTC 3 cut(s) 85, 377, 427
BstMBI GATC 5 cut(s) 86, 132, 194, 292, 567
BstMWI GCNNNNNNNGC 5 cut(s) 234, 257, 345, 419, 545
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 244, 466, 613
BstV2I GAAGAC 1 cut(s) 586
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
Bsu15I ATCGAT 1 cut(s) 570
BsuRI GGCC 4 cut(s) 79, 138, 163, 278
BsuTUI ATCGAT 1 cut(s) 570
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 394
BtsCI GGATG 2 cut(s) 209, 305
BtsI GCAGTG 3 cut(s) 604, 613, 621
BtsIMutI CAGTG 4 cut(s) 164, 604, 613, 621
Cac8I GCNNGC 3 cut(s) 239, 325, 595
CfoI GCGC 1 cut(s) 479
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 3 cut(s) 77, 121, 162
ClaI ATCGAT 1 cut(s) 570
CseI GACGC 1 cut(s) 561
CsiI ACCWGGT 1 cut(s) 94
Csp6I GTAC 1 cut(s) 246
CspAI ACCGGT 1 cut(s) 394
CviAII CATG 3 cut(s) 25, 140, 167
CviQI GTAC 1 cut(s) 246
DpnI GATC 5 cut(s) 88, 134, 196, 294, 569
DpnII GATC 5 cut(s) 86, 132, 194, 292, 567
EaeI YGGCCR 1 cut(s) 136
EciI GGCGGA 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 658
Eco130I CCWWGG 3 cut(s) 124, 139, 638
Eco24I GRGCYC 1 cut(s) 660
Eco31I GGTCTC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 121
Eco47III AGCGCT 1 cut(s) 478
Eco53kI GAGCTC 1 cut(s) 658
Eco91I GGTNACC 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 658
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO65I GGTNACC 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 3 cut(s) 124, 139, 638
EcoT38I GRGCYC 1 cut(s) 660
ErhI CCWWGG 3 cut(s) 124, 139, 638
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 3 cut(s) 28, 143, 170
FaiI YATR 9 cut(s) 19, 26, 65, 101, 141, 168, 184, 557, 651
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 571, 603
FatI CATG 3 cut(s) 24, 139, 166
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 7 cut(s) 12, 50, 53, 258, 480, 619, 627
FokI GGATG 2 cut(s) 216, 292
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 7 cut(s) 12, 50, 53, 258, 480, 619, 627
FspBI CTAG 3 cut(s) 74, 200, 639
GlaI GCGC 1 cut(s) 478
GluI GCNGC 7 cut(s) 12, 50, 53, 258, 480, 619, 627
HaeII RGCGCY 1 cut(s) 480
HaeIII GGCC 4 cut(s) 79, 138, 163, 278
HapII CCGG 1 cut(s) 395
HgaI GACGC 1 cut(s) 561
HhaI GCGC 1 cut(s) 479
Hin1I GRCGYC 1 cut(s) 583
Hin1II CATG 3 cut(s) 28, 143, 170
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 4 cut(s) 216, 352, 363, 496
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 3 cut(s) 106, 210, 602
Hpy188I TCNGA 2 cut(s) 578, 662
Hpy188III TCNNGA 3 cut(s) 90, 360, 488
Hpy8I GTNNAC 3 cut(s) 106, 210, 602
Hpy99I CGWCG 1 cut(s) 555
HpyAV CCTTC 2 cut(s) 386, 517
HpyCH4IV ACGT 2 cut(s) 59, 583
HpyCH4V TGCA 6 cut(s) 39, 260, 450, 482, 629, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 234, 257, 345, 419, 545
HpySE526I ACGT 2 cut(s) 59, 583
Hsp92I GRCGYC 1 cut(s) 583
Hsp92II CATG 3 cut(s) 28, 143, 170
HspAI GCGC 1 cut(s) 477
Kzo9I GATC 5 cut(s) 86, 132, 194, 292, 567
Lsp1109I GCAGC 3 cut(s) 244, 466, 613
MabI ACCWGGT 1 cut(s) 94
MaeI CTAG 3 cut(s) 74, 200, 639
MaeII ACGT 2 cut(s) 59, 583
MaeIII GTNAC 1 cut(s) 381
MalI GATC 5 cut(s) 88, 134, 196, 294, 569
MboI GATC 5 cut(s) 86, 132, 194, 292, 567
MboII GAAGA 2 cut(s) 537, 591
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 660
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 2 cut(s) 110, 556
MnlI CCTC 7 cut(s) 218, 227, 247, 289, 324, 416, 453
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 5 cut(s) 234, 257, 345, 419, 545
NcoI CCATGG 1 cut(s) 139
NdeII GATC 5 cut(s) 86, 132, 194, 292, 567
NlaIII CATG 3 cut(s) 28, 143, 170
NlaIV GGNNCC 2 cut(s) 164, 294
NspI RCATGY 1 cut(s) 28
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PfeI GAWTC 3 cut(s) 216, 352, 363
PinAI ACCGGT 1 cut(s) 394
PkrI GCNGC 7 cut(s) 13, 51, 54, 259, 481, 620, 628
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PscI ACATGT 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 381
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 164, 294
PspPI GGNCC 3 cut(s) 77, 121, 162
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SacI GAGCTC 1 cut(s) 660
SalI GTCGAC 1 cut(s) 208
SatI GCNGC 7 cut(s) 12, 50, 53, 258, 480, 619, 627
Sau3AI GATC 5 cut(s) 86, 132, 194, 292, 567
Sau96I GGNCC 3 cut(s) 77, 121, 162
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 660
SetI ASST 7 cut(s) 62, 100, 130, 325, 586, 644, 660
SexAI ACCWGGT 1 cut(s) 94
SinI GGWCC 1 cut(s) 121
SsiI CCGC 5 cut(s) 49, 52, 251, 346, 619
SspMI CTAG 3 cut(s) 74, 200, 639
SstI GAGCTC 1 cut(s) 660
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 3 cut(s) 124, 139, 638
TaiI ACGT 2 cut(s) 62, 586
TaqI TCGA 6 cut(s) 89, 209, 401, 455, 550, 570
TauI GCSGC 3 cut(s) 52, 55, 621
TfiI GAWTC 3 cut(s) 216, 352, 363
TscAI CASTG 4 cut(s) 164, 604, 620, 628
TseI GCWGC 4 cut(s) 11, 257, 479, 626
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 4 cut(s) 164, 604, 620, 628
VpaK11BI GGWCC 1 cut(s) 121
XagI CCTNNNNNAGG 1 cut(s) 591
XceI RCATGY 1 cut(s) 28
XmaJI CCTAGG 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 3 cut(s) 74, 200, 639
ZraI GACGTC 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.