RLG00000031092

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0030981
Physical Location & Seq
Reverse (-)
1950320 .. 1951722
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031092

Sequence Viewer

Length: 576 bp
ATGATTGATGAGCTCTGGACCTACATTGAAGATGCAAATGTGAAAGTCATCGGGGTGGAAGTTGGAGTGAAAATGCATGATGTAATTCGTGATATGGCACTGTGGTTAGCTTCTGATCCTTCACAGAGTTTTCTAGTGCAAACAGGTGAAGAGGAAGTGCAGGGTTTGAAACACTTGGATGAATCGACCTTGAATGTAACAAGCTTCTCTTTGCTCAATCAGTTGTTTAGCTGCCACGGGTTACTATGCTGCATTACAAATCTTGTCTTGAAGGTATGCGACATGAAAGCAGAAGATGTTAGTTTTCTTGAAATTTCGAAATATACTGGACTTAAGATGTTGGAAGTTGATAGGGCAAAAGCAGCTCAAGGACCCCGCGACCCGATGATGACACAACCATATTGCTTCCGTAGTCTTTCCTCAGTAACTTTAGTGAGATGCTCCAATGTGCAGGACCAGAAAGGCTACGGAAGGCTAAAGTTACTGAGGAAAGGCTACGGAAGCAATATGATTGTGTCATCATCGGGTCCCGGGGTCCTTGAGCTGCTTTTGCCCTATCAACTTCCAACATCTTAA

Protein Analysis

192

Amino Acids

21.24

Weight (kDa)

5.39

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030981)

Species Orthologous Gene IDs
rosa_laevigata RLG00000031092
rosa_samantha Rh5CG029800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 378
AciI CCGC 1 cut(s) 376
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 312
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 5 cut(s) 29, 169, 193, 271, 311
AluBI AGCT 6 cut(s) 13, 110, 204, 231, 365, 544
AluI AGCT 6 cut(s) 13, 110, 204, 231, 365, 544
Alw21I GWGCWC 1 cut(s) 15
AlwI GGATC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 530
ApeKI GCWGC 4 cut(s) 231, 249, 362, 544
ApoI RAATTY 1 cut(s) 312
AspS9I GGNCC 5 cut(s) 18, 371, 454, 527, 535
AsuC2I CCSGG 2 cut(s) 531, 532
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 5 cut(s) 18, 371, 454, 527, 535
BanII GRGCYC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 4 cut(s) 218, 236, 374, 531
BcnI CCSGG 2 cut(s) 531, 532
BfaI CTAG 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 332
BisI GCNGC 4 cut(s) 232, 250, 363, 545
BlsI GCNGC 4 cut(s) 233, 251, 364, 546
Bme1390I CCNGG 2 cut(s) 531, 532
Bme18I GGWCC 5 cut(s) 18, 371, 454, 527, 535
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 5 cut(s) 18, 371, 454, 527, 535
BmiI GGNNCC 4 cut(s) 373, 528, 529, 536
BmrFI CCNGG 2 cut(s) 531, 532
BmsI GCATC 2 cut(s) 22, 428
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 351, 560
BpuMI CCSGG 2 cut(s) 531, 532
BsaJI CCNNGG 3 cut(s) 235, 530, 531
Bse1I ACTGG 1 cut(s) 331
BseDI CCNNGG 3 cut(s) 235, 530, 531
BseGI GGATG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 435, 476
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 4 cut(s) 218, 236, 374, 531
BsgI GTGCAG 2 cut(s) 179, 470
Bsh1236I CGCG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 1 cut(s) 531
BslFI GGGAC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 513
BsoBI CYCGRG 1 cut(s) 530
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 376
BspCNI CTCAG 2 cut(s) 434, 477
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 4 cut(s) 373, 528, 529, 536
BspPI GGATC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 317
BspTI CTTAAG 1 cut(s) 332
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 3 cut(s) 235, 530, 531
BssMI GATC 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 332
BstBI TTCGAA 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 421, 485
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 362, 501, 550
BstSCI CCNGG 2 cut(s) 529, 530
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 4 cut(s) 218, 236, 374, 531
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 98
Cfr13I GGNCC 5 cut(s) 18, 371, 454, 527, 535
Cfr9I CCCGGG 1 cut(s) 530
CviAII CATG 2 cut(s) 77, 283
CviJI RGCY 9 cut(s) 13, 110, 204, 231, 365, 465, 475, 495, 544
CviKI_1 RGCY 9 cut(s) 13, 110, 204, 231, 365, 465, 475, 495, 544
DdeI CTNAG 2 cut(s) 421, 485
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 5 cut(s) 18, 371, 454, 527, 535
Eco53kI GAGCTC 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 3 cut(s) 371, 527, 535
EcoT22I ATGCAT 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 2 cut(s) 80, 286
FaiI YATR 8 cut(s) 78, 95, 247, 277, 284, 324, 400, 509
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FaqI GGGAC 1 cut(s) 513
FatI CATG 2 cut(s) 76, 282
FauI CCCGC 1 cut(s) 383
Fnu4HI GCNGC 4 cut(s) 232, 250, 363, 545
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 4 cut(s) 232, 250, 363, 545
FspBI CTAG 1 cut(s) 134
GluI GCNGC 4 cut(s) 232, 250, 363, 545
HapII CCGG 1 cut(s) 531
Hin1II CATG 2 cut(s) 80, 286
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 1 cut(s) 182
HpaII CCGG 1 cut(s) 531
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 4 cut(s) 16, 89, 268, 308
HpyAV CCTTC 3 cut(s) 129, 265, 465
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 6 cut(s) 35, 76, 139, 160, 252, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 501, 550
HpyF3I CTNAG 2 cut(s) 421, 485
Hsp92II CATG 2 cut(s) 80, 286
KflI GGGWCCC 1 cut(s) 527
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 6 cut(s) 129, 146, 312, 437, 470, 544
Lsp1109I GCAGC 4 cut(s) 218, 236, 374, 531
LweI GCATC 2 cut(s) 22, 428
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 4 cut(s) 196, 240, 424, 480
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 3 cut(s) 41, 161, 305
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 2 cut(s) 84, 312
MmeI TCCRAC 2 cut(s) 43, 321
MnlI CCTC 3 cut(s) 145, 430, 480
Mph1103I ATGCAT 1 cut(s) 78
MseI TTAA 2 cut(s) 333, 574
MslI CAYNNNNRTG 2 cut(s) 53, 177
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 1 cut(s) 531
MspR9I CCNGG 2 cut(s) 531, 532
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 362, 501, 550
NciI CCSGG 2 cut(s) 531, 532
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 80, 286
NlaIV GGNNCC 4 cut(s) 373, 528, 529, 536
NsiI ATGCAT 1 cut(s) 78
NspV TTCGAA 1 cut(s) 317
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 4 cut(s) 233, 251, 364, 546
PpuMI RGGWCCY 3 cut(s) 371, 527, 535
Psp124BI GAGCTC 1 cut(s) 15
Psp5II RGGWCCY 3 cut(s) 371, 527, 535
PspN4I GGNNCC 4 cut(s) 373, 528, 529, 536
PspPI GGNCC 5 cut(s) 18, 371, 454, 527, 535
PspPPI RGGWCCY 3 cut(s) 371, 527, 535
RseI CAYNNNNRTG 2 cut(s) 53, 177
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 333, 574
SatI GCNGC 4 cut(s) 232, 250, 363, 545
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 5 cut(s) 18, 371, 454, 527, 535
ScrFI CCNGG 2 cut(s) 531, 532
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 2 cut(s) 22, 428
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 5 cut(s) 18, 371, 454, 527, 535
SmaI CCCGGG 1 cut(s) 532
SmiMI CAYNNNNRTG 2 cut(s) 53, 177
SmlI CTYRAG 3 cut(s) 332, 366, 539
SmoI CTYRAG 3 cut(s) 332, 366, 539
Sse9I AATT 2 cut(s) 84, 312
SsiI CCGC 1 cut(s) 376
SspMI CTAG 1 cut(s) 134
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 529, 530
TaaI ACNGT 1 cut(s) 102
TaqI TCGA 2 cut(s) 185, 317
TasI AATT 2 cut(s) 84, 312
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 333, 574
Tru9I TTAA 2 cut(s) 333, 574
TscAI CASTG 1 cut(s) 105
TseI GCWGC 4 cut(s) 231, 249, 362, 544
TspDTI ATGAA 2 cut(s) 195, 299
TspGWI ACGGA 3 cut(s) 398, 483, 513
TspMI CCCGGG 1 cut(s) 530
TspRI CASTG 1 cut(s) 105
Vha464I CTTAAG 1 cut(s) 332
VpaK11BI GGWCC 5 cut(s) 18, 371, 454, 527, 535
XapI RAATTY 1 cut(s) 312
XmaI CCCGGG 1 cut(s) 530
XspI CTAG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.