Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0021422

Physical Location & Seq

Genomic Coordinates Forward (+)

18042505 .. 18053439

Gene Structure 10935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGGGCTTACTCGGAGGATCAAGCAGTGGATCTGGTGGAAGAAGCGGGGGTATATATAACTCAGTTAAGTTCAAACTTGCGAGATCATCCGCGGCTGCTTCCTCTAGCACTATAGGAACAGAATGCTATCCATCCCTTGACAAGGTCCGGGAAGCATTGAAGCATGCCGGTCTTGAAGTATGCTATCTCATTATCGGAATCCACTTTACAGAAAACAATCACGGAACAGGTGATCCATATGAAAAGGCCATCTCCATCATCGAAAAAACTTTGGAACCATTTGATGCTGACAACTTATATCATTGTTTTGGCTTCGGTGACGCCGAAGAAGCTTTCAGCTTTAGAAATGACCATTCACCTTGCAAGGGTATTAAAGAAGTTTTGGCCTGCTACAACAATATAGTTCCGAACGTAACAATTTCAGGGCCAACTTCTTTTGCAGCGGTAATTAATGCCGCTGTAGATATTGTTGACAAAAGTTTCGGTCAATTCCATACTCTTGTCCTAGTTGCAGAAAACCAGGTTACCAAAAGCTTCTTCAATCCTAAGAGTCAAAGGTTGAGTCCAGAAGGAATAAAAACAGCCGAATCAATTATAAGTGCGAGTTCATACCCCCTCTCCATTATTCTTGTTGGAGTTGGTTATGGATCATGTGAACACATGAAGGAGTTTCAGAACATAATCCCTAAGAGAAGATTGAACAATTTTCAGTTTGTCAACTTTACTGATATTGAGAATTGTATGTCCGATGCAACTCCCTCTATGAAAGAAGCAGCTTTTGCTTTTGCCGCACTCAAGGAAACTCCAAAACAGTATAAAGCAGCTCTTCAACTTGAACTGATTGGAAATATAACAGGGAAAGCAAGGACAGTTGTACCACGCAGTCCACCAGTTCCTCACACTCATCATGCACCGGCAACTTCTGAACAAAGTAACCTTTTAGAACCTGTTTCAGATGAAAGATGCCGGCGGGAGGTTACAGATGCCTTGTGGAAAGGTCTGGAGTCCTCTAATTTCATTGTTGGAATTGACTTTACTAAAAGCAATGAATGGACAGGAAACATGCGAGTCGACATTCAGAACCTGCATGCTTCTGGTGATGCACCTAATCCATACGAAAGAGTTATATCTCTACTAGGGAAAACTTTTGCTAGTCCCTTTCAGAAAGATGACTTAATTCATTGTTTTGGTTTTGGTGATGTTACCACGGTTGATCACGAGGTGTTTAGCTTTCACGGTGATTATTCACCCTGCTATGGTTTTGATGAAGTCTTGGGTTGCTACAAAAGAATAGTCCGAATGGTGGAACTAGCAGGCCGAGCTTCTTATGCCCCTGTAATAGAGGCTGCAGTGGACATTGTGGAGAGAAGTGGTGGTCAATACCATGTGCTAGTTATCATCGCAGCTGGCCAGGTTACGAAAAGTTCCCATACTAGCAAGATGGAATTAAGGGCACAAGAAGACGAAACAATCAGATCGATTGCGGATGCAAGTTCATATCCACTCTTCATTATTGTTGTCGGAGTTGGTGATGGTCCATGGGAAGACATGAAGAAATTTGAGGATAAGATCCCTGTACGTGGTAATTTTCAGTTTGTTAACTTTACTGAAATTATGTCTCTACATTCAACTACCTCTGAGAAACAAGCTGCTTTTGCTCTTGCTGCTCGCGCGGAAGTACCGATCCACTATATGGCAGCTGTCGATCGTGGACTAATTGGACGTAGGACAGGGAAAGCAAACAAAATTATTCCACGCCCTCCACCTGTTCCTAAAACTCATTGTGCACCGCCGACTCATGAACCAAGTGATCATTCACCATCTGTTATGGATTACCGAAGAATGACGGACTGCTGCTCAGTCTGCTTGGATAGTGCAAAGGACCTGGCCTTTGGCTGCGGACACATGACTTGCAGAGAATGCGGCTTTAGAATTTCCAAGTGTCCAATATGCCGCCGACCGATCCTCAGTCGCCTCAGGCTTTACAATGTTATCGGGTCGGGCTTTACGGCGGAGTTCGGCCTCGACCTCCTGGTGACCGGGGTTAGTGATCTGCAAAATGAAATAGCCAATGATGCCCGGAATGACGCCGCATACGGTGGTGAAGGTGAAAAAGAAGGGCTTGGAGTCGCGAGTCTTGGTCACTATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009690 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009850 GO:0009867 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0034754 GO:0036211 GO:0042221 GO:0042445 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

718

Amino Acids

78.21

Weight (kDa)

6.05

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	76 - 281	5.7e-48	Copine
Copine	PF07002	362 - 573	9.6e-53	Copine
zf-C3HC4_3	PF13920	617 - 656	1.6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021422)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0023181
rosa_laevigata	RLG00000032706
rosa_samantha	Rh5CG178500 Rh5DG165100
rosa_wichuraiana	Rw0G018290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	1092
AccB7I	CCANNNNNTGG	1 cut(s)	1693
AccI	GTMKAC	1 cut(s)	1071
AccII	CGCG	4 cut(s)	92, 1671, 1673, 2132
AclWI	GGATC	7 cut(s)	25, 37, 227, 655, 1564, 1678, 1957
AcoI	YGGCCR	1 cut(s)	1408
AcsI	RAATTY	2 cut(s)	1556, 1932
AcyI	GRCGYC	2 cut(s)	321, 2088
AdeI	CACNNNGTG	1 cut(s)	1222
AfaI	GTAC	3 cut(s)	876, 1578, 1680
AfiI	CCNNNNNNNGG	7 cut(s)	142, 365, 973, 1256, 1303, 1580, 1693
AgsI	TTSAA	8 cut(s)	73, 160, 176, 541, 700, 830, 836, 1629
AjnI	CCWGG	4 cut(s)	519, 1410, 1884, 2031
AjuI	GAANNNNNNNTTGG	4 cut(s)	521, 553, 1798, 1830
AloI	GAACNNNNNNTCC	2 cut(s)	217, 249
Alw21I	GWGCWC	1 cut(s)	1789
Alw26I	GTCTC	1 cut(s)	1623
Alw44I	GTGCAC	1 cut(s)	1785
AlwI	GGATC	7 cut(s)	25, 37, 227, 655, 1564, 1678, 1957
AlwNI	CAGNNNCTG	1 cut(s)	1084
AoxI	GGCC	7 cut(s)	246, 384, 425, 1315, 1408, 1887, 2020
ApaLI	GTGCAC	1 cut(s)	1785
ApoI	RAATTY	2 cut(s)	1556, 1932
ArsI	GACNNNNNNTTYG	8 cut(s)	464, 496, 547, 579, 1278, 1310, 1874, 1906
AseI	ATTAAT	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	1673
AspS9I	GGNCC	4 cut(s)	145, 425, 1535, 1882
AsuC2I	CCSGG	3 cut(s)	149, 2041, 2080
AvaII	GGWCC	3 cut(s)	145, 1535, 1882
AxyI	CCTNAGG	1 cut(s)	1976
BaeGI	GKGCMC	2 cut(s)	1456, 1789
BaeI	ACNNNNGTAYC	2 cut(s)	858, 891
BalI	TGGCCA	1 cut(s)	1410
BauI	CACGAG	1 cut(s)	1217
BbsI	GAAGAC	2 cut(s)	1467, 1551
Bbv12I	GWGCWC	1 cut(s)	1789
BccI	CCATC	6 cut(s)	139, 257, 263, 1435, 1526, 1828
BceAI	ACGGC	1 cut(s)	2025
BciT130I	CCWGG	4 cut(s)	521, 1412, 1886, 2033
BclI	TGATCA	2 cut(s)	1213, 1810
BcnI	CCSGG	3 cut(s)	149, 2041, 2080
BcoDI	GTCTC	1 cut(s)	1623
BfaI	CTAG	7 cut(s)	105, 506, 1136, 1152, 1310, 1391, 1434
BfmI	CTRYAG	3 cut(s)	111, 459, 1347
BfuAI	ACCTGC	1 cut(s)	1092
Bme1390I	CCNGG	7 cut(s)	149, 521, 1412, 1886, 2033, 2041, 2080
Bme18I	GGWCC	3 cut(s)	145, 1535, 1882
BmgT120I	GGNCC	4 cut(s)	145, 425, 1535, 1882
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	7 cut(s)	149, 521, 1412, 1886, 2033, 2041, 2080
BmsI	GCATC	7 cut(s)	274, 739, 953, 973, 1090, 1477, 2065
BpiI	GAAGAC	2 cut(s)	1467, 1551
BpmI	CTGGAG	1 cut(s)	1022
BpuEI	CTTGAG	1 cut(s)	779
BpuMI	CCSGG	3 cut(s)	149, 2041, 2080
Bsa29I	ATCGAT	1 cut(s)	1478
BsaAI	YACGTR	1 cut(s)	1580
BsaHI	GRCGYC	2 cut(s)	321, 2088
BsaJI	CCNNGG	4 cut(s)	90, 1206, 1538, 2040
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	7 cut(s)	142, 365, 973, 1256, 1303, 1580, 1693
Bse118I	RCCGGY	3 cut(s)	167, 913, 966
Bse1I	ACTGG	1 cut(s)	890
Bse21I	CCTNAGG	1 cut(s)	1976
Bse3DI	GCAATG	1 cut(s)	1051
BseBI	CCWGG	4 cut(s)	521, 1412, 1886, 2033
BseCI	ATCGAT	1 cut(s)	1478
BseDI	CCNNGG	4 cut(s)	90, 1206, 1538, 2040
BseGI	GGATG	3 cut(s)	86, 131, 1492
BseLI	CCNNNNNNNGG	7 cut(s)	142, 365, 973, 1256, 1303, 1580, 1693
BseMI	GCAATG	1 cut(s)	1051
BseMII	CTCAG	5 cut(s)	75, 1629, 1872, 1981, 1990
BseNI	ACTGG	1 cut(s)	890
BseSI	GKGCMC	2 cut(s)	1456, 1789
Bsh1236I	CGCG	4 cut(s)	92, 1671, 1673, 2132
Bsh1285I	CGRYCG	2 cut(s)	1708, 1961
BshFI	GGCC	7 cut(s)	248, 386, 427, 1317, 1410, 1889, 2022
BshVI	ATCGAT	1 cut(s)	1478
BsiEI	CGRYCG	2 cut(s)	1708, 1961
BsiHKAI	GWGCWC	1 cut(s)	1789
BsiSI	CCGG	6 cut(s)	148, 168, 914, 967, 2040, 2080
BslFI	GGGAC	1 cut(s)	1140
BslI	CCNNNNNNNGG	7 cut(s)	142, 365, 973, 1256, 1303, 1580, 1693
BsmAI	GTCTC	1 cut(s)	1623
BsmFI	GGGAC	1 cut(s)	1140
BsmI	GAATGC	2 cut(s)	128, 1925
BsnI	GGCC	7 cut(s)	248, 386, 427, 1317, 1410, 1889, 2022
Bsp1286I	GDGCHC	2 cut(s)	1456, 1789
Bsp19I	CCATGG	1 cut(s)	1538
Bsp68I	TCGCGA	1 cut(s)	2132
BspANI	GGCC	7 cut(s)	248, 386, 427, 1317, 1410, 1889, 2022
BspCNI	CTCAG	5 cut(s)	74, 1630, 1871, 1980, 1989
BspDI	ATCGAT	1 cut(s)	1478
BspFNI	CGCG	4 cut(s)	92, 1671, 1673, 2132
BspHI	TCATGA	1 cut(s)	1798
BspLI	GGNNCC	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	1351
BspMI	ACCTGC	1 cut(s)	1092
BspPI	GGATC	7 cut(s)	25, 37, 227, 655, 1564, 1678, 1957
BspQI	GCTCTTC	1 cut(s)	831
BsrDI	GCAATG	1 cut(s)	1051
BsrFI	RCCGGY	3 cut(s)	167, 913, 966
BsrI	ACTGG	1 cut(s)	890
BssAI	RCCGGY	3 cut(s)	167, 913, 966
BssECI	CCNNGG	4 cut(s)	90, 1206, 1538, 2040
BssNI	GRCGYC	2 cut(s)	321, 2088
BssSI	CACGAG	1 cut(s)	1217
BssT1I	CCWWGG	1 cut(s)	1538
Bst2BI	CACGAG	1 cut(s)	1217
Bst2UI	CCWGG	4 cut(s)	521, 1412, 1886, 2033
Bst4CI	ACNGT	5 cut(s)	813, 871, 1210, 1238, 2099
Bst6I	CTCTTC	2 cut(s)	831, 1511
BstACI	GRCGYC	2 cut(s)	321, 2088
BstAPI	GCANNNNNTGC	2 cut(s)	779, 1920
BstBAI	YACGTR	1 cut(s)	1580
BstC8I	GCNNGC	7 cut(s)	165, 388, 968, 1089, 1315, 1408, 1669
BstDEI	CTNAG	7 cut(s)	61, 546, 687, 1638, 1858, 1967, 1976
BstDSI	CCRYGG	3 cut(s)	90, 1206, 1538
BstEII	GGTNACC	2 cut(s)	523, 2035
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	86, 131, 1492
BstFNI	CGCG	4 cut(s)	92, 1671, 1673, 2132
BstHHI	GCGC	1 cut(s)	1673
BstMAI	GTCTC	1 cut(s)	1623
BstMCI	CGRYCG	2 cut(s)	1708, 1961
BstNI	CCWGG	4 cut(s)	521, 1412, 1886, 2033
BstNSI	RCATGY	3 cut(s)	167, 1066, 1091
BstPI	GGTNACC	2 cut(s)	523, 2035
BstSCI	CCNGG	7 cut(s)	147, 519, 1410, 1884, 2031, 2039, 2078
BstSFI	CTRYAG	3 cut(s)	111, 459, 1347
BstSLI	GKGCMC	2 cut(s)	1456, 1789
BstUI	CGCG	4 cut(s)	92, 1671, 1673, 2132
BstV2I	GAAGAC	2 cut(s)	1467, 1551
BstX2I	RGATCY	2 cut(s)	29, 1569
BstYI	RGATCY	2 cut(s)	29, 1569
Bsu15I	ATCGAT	1 cut(s)	1478
Bsu36I	CCTNAGG	1 cut(s)	1976
BsuRI	GGCC	7 cut(s)	248, 386, 427, 1317, 1410, 1889, 2022
BsuTUI	ATCGAT	1 cut(s)	1478
BtgI	CCRYGG	3 cut(s)	90, 1206, 1538
BtgZI	GCGATG	1 cut(s)	1384
BtsCI	GGATG	3 cut(s)	86, 131, 1492
BtsI	GCAGTG	2 cut(s)	31, 1356
BtsIMutI	CAGTG	2 cut(s)	31, 1356
BtuMI	TCGCGA	1 cut(s)	2132
BveI	ACCTGC	1 cut(s)	1092
Cac8I	GCNNGC	7 cut(s)	165, 388, 968, 1089, 1315, 1408, 1669
CaiI	CAGNNNCTG	1 cut(s)	1084
CciI	TCATGA	1 cut(s)	1798
CfoI	GCGC	1 cut(s)	1673
Cfr10I	RCCGGY	3 cut(s)	167, 913, 966
Cfr13I	GGNCC	4 cut(s)	145, 425, 1535, 1882
Cfr42I	CCGCGG	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	1478
CseI	GACGC	2 cut(s)	329, 2096
CsiI	ACCWGGT	1 cut(s)	519
Csp6I	GTAC	3 cut(s)	875, 1577, 1679
CviQI	GTAC	3 cut(s)	875, 1577, 1679
DdeI	CTNAG	7 cut(s)	61, 546, 687, 1638, 1858, 1967, 1976
DraIII	CACNNNGTG	1 cut(s)	1222
EaeI	YGGCCR	1 cut(s)	1408
Eam1104I	CTCTTC	2 cut(s)	831, 1511
EarI	CTCTTC	2 cut(s)	831, 1511
EciI	GGCGGA	1 cut(s)	2027
Eco130I	CCWWGG	1 cut(s)	1538
Eco47I	GGWCC	3 cut(s)	145, 1535, 1882
Eco81I	CCTNAGG	1 cut(s)	1976
Eco91I	GGTNACC	2 cut(s)	523, 2035
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	1882
EcoO65I	GGTNACC	2 cut(s)	523, 2035
EcoRII	CCWGG	4 cut(s)	519, 1410, 1884, 2031
EcoT14I	CCWWGG	1 cut(s)	1538
ErhI	CCWWGG	1 cut(s)	1538
FalI	AAGNNNNNCTT	4 cut(s)	810, 842, 2106, 2138
FaqI	GGGAC	1 cut(s)	1140
FauI	CCCGC	2 cut(s)	38, 963
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	2 cut(s)	1213, 1810
FblI	GTMKAC	1 cut(s)	1071
FokI	GGATG	3 cut(s)	73, 118, 1499
FspBI	CTAG	7 cut(s)	105, 506, 1136, 1152, 1310, 1391, 1434
GlaI	GCGC	1 cut(s)	1672
GsuI	CTGGAG	1 cut(s)	1022
HaeIII	GGCC	7 cut(s)	248, 386, 427, 1317, 1410, 1889, 2022
HapII	CCGG	6 cut(s)	148, 168, 914, 967, 2040, 2080
HgaI	GACGC	2 cut(s)	329, 2096
HhaI	GCGC	1 cut(s)	1673
Hin1I	GRCGYC	2 cut(s)	321, 2088
Hin6I	GCGC	1 cut(s)	1671
HinP1I	GCGC	1 cut(s)	1671
HincII	GTYRAC	4 cut(s)	472, 718, 1072, 1600
HindII	GTYRAC	4 cut(s)	472, 718, 1072, 1600
HindIII	AAGCTT	2 cut(s)	330, 532
HinfI	GANTC	9 cut(s)	198, 550, 562, 587, 1004, 1068, 1795, 2127, 2134
HpaI	GTTAAC	1 cut(s)	1600
HpaII	CCGG	6 cut(s)	148, 168, 914, 967, 2040, 2080
Hpy166II	GTNNAC	9 cut(s)	472, 656, 718, 887, 1072, 1354, 1600, 1712, 1787
Hpy188III	TCNNGA	6 cut(s)	173, 566, 1001, 1217, 1799, 2131
Hpy8I	GTNNAC	9 cut(s)	472, 656, 718, 887, 1072, 1354, 1600, 1712, 1787
HpyAV	CCTTC	4 cut(s)	563, 658, 2099, 2111
HpyCH4III	ACNGT	5 cut(s)	813, 871, 1210, 1238, 2099
HpyCH4IV	ACGT	3 cut(s)	411, 1579, 1723
HpyF3I	CTNAG	7 cut(s)	61, 546, 687, 1638, 1858, 1967, 1976
HpySE526I	ACGT	3 cut(s)	411, 1579, 1723
Hsp92I	GRCGYC	2 cut(s)	321, 2088
HspAI	GCGC	1 cut(s)	1671
KroI	GCCGGC	1 cut(s)	966
KroNI	GCCGGC	1 cut(s)	968
Ksp22I	TGATCA	2 cut(s)	1213, 1810
KspAI	GTTAAC	1 cut(s)	1600
KspI	CCGCGG	1 cut(s)	93
LguI	GCTCTTC	1 cut(s)	831
LweI	GCATC	7 cut(s)	274, 739, 953, 973, 1090, 1477, 2065
MabI	ACCWGGT	1 cut(s)	519
MaeI	CTAG	7 cut(s)	105, 506, 1136, 1152, 1310, 1391, 1434
MaeII	ACGT	3 cut(s)	411, 1579, 1723
MaeIII	GTNAC	9 cut(s)	317, 412, 523, 932, 976, 1201, 1414, 2035, 2141
MflI	RGATCY	2 cut(s)	29, 1569
MhlI	GDGCHC	2 cut(s)	1456, 1789
MlsI	TGGCCA	1 cut(s)	1410
MluNI	TGGCCA	1 cut(s)	1410
MlyI	GAGTC	7 cut(s)	559, 571, 1013, 1077, 1789, 2136, 2143
MmeI	TCCRAC	3 cut(s)	613, 1003, 1501
Mox20I	TGGCCA	1 cut(s)	1410
MroNI	GCCGGC	1 cut(s)	966
MscI	TGGCCA	1 cut(s)	1410
MseI	TTAA	6 cut(s)	66, 372, 450, 1175, 1448, 1599
Msp20I	TGGCCA	1 cut(s)	1410
MspA1I	CMGCKG	5 cut(s)	92, 443, 458, 1406, 1700
MspI	CCGG	6 cut(s)	148, 168, 914, 967, 2040, 2080
MspR9I	CCNGG	7 cut(s)	149, 521, 1412, 1886, 2033, 2041, 2080
Mva1269I	GAATGC	2 cut(s)	128, 1925
MvaI	CCWGG	4 cut(s)	521, 1412, 1886, 2033
MvnI	CGCG	4 cut(s)	92, 1671, 1673, 2132
NaeI	GCCGGC	1 cut(s)	968
NciI	CCSGG	3 cut(s)	149, 2041, 2080
NcoI	CCATGG	1 cut(s)	1538
NdeI	CATATG	1 cut(s)	238
NgoMIV	GCCGGC	1 cut(s)	966
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	1343
NmuCI	GTSAC	3 cut(s)	317, 2035, 2141
NruI	TCGCGA	1 cut(s)	2132
NspI	RCATGY	3 cut(s)	167, 1066, 1091
PaeI	GCATGC	2 cut(s)	167, 1091
PagI	TCATGA	1 cut(s)	1798
PciSI	GCTCTTC	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	2 cut(s)	128, 1925
PdiI	GCCGGC	1 cut(s)	968
PfeI	GAWTC	2 cut(s)	198, 587
PflFI	GACNNNGTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	1693
PfoI	TCCNGGA	1 cut(s)	147
Ple19I	CGATCG	1 cut(s)	1708
PleI	GAGTC	7 cut(s)	558, 570, 1012, 1076, 1789, 2135, 2142
PpsI	GAGTC	7 cut(s)	558, 570, 1012, 1076, 1789, 2135, 2142
Ppu21I	YACGTR	1 cut(s)	1580
PpuMI	RGGWCCY	1 cut(s)	1882
PshBI	ATTAAT	1 cut(s)	450
PsiI	TTATAA	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	1882
Psp6I	CCWGG	4 cut(s)	519, 1410, 1884, 2031
PspEI	GGTNACC	2 cut(s)	523, 2035
PspGI	CCWGG	4 cut(s)	519, 1410, 1884, 2031
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	4 cut(s)	145, 425, 1535, 1882
PspPPI	RGGWCCY	1 cut(s)	1882
PstI	CTGCAG	1 cut(s)	1351
PstNI	CAGNNNCTG	1 cut(s)	1084
PsuI	RGATCY	2 cut(s)	29, 1569
PsyI	GACNNNGTC	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	1708
PvuII	CAGCTG	2 cut(s)	1406, 1700
RruI	TCGCGA	1 cut(s)	2132
RsaI	GTAC	3 cut(s)	876, 1578, 1680
RsaNI	GTAC	3 cut(s)	875, 1577, 1679
SacII	CCGCGG	1 cut(s)	93
SalI	GTCGAC	1 cut(s)	1070
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	6 cut(s)	66, 372, 450, 1175, 1448, 1599
Sau96I	GGNCC	4 cut(s)	145, 425, 1535, 1882
SchI	GAGTC	7 cut(s)	559, 571, 1013, 1077, 1789, 2136, 2143
ScrFI	CCNGG	7 cut(s)	149, 521, 1412, 1886, 2033, 2041, 2080
SduI	GDGCHC	2 cut(s)	1456, 1789
SexAI	ACCWGGT	1 cut(s)	519
SfaNI	GCATC	7 cut(s)	274, 739, 953, 973, 1090, 1477, 2065
SfcI	CTRYAG	3 cut(s)	111, 459, 1347
Sfr303I	CCGCGG	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	93
SinI	GGWCC	3 cut(s)	145, 1535, 1882
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
SphI	GCATGC	2 cut(s)	167, 1091
SspMI	CTAG	7 cut(s)	105, 506, 1136, 1152, 1310, 1391, 1434
StyD4I	CCNGG	7 cut(s)	147, 519, 1410, 1884, 2031, 2039, 2078
StyI	CCWWGG	1 cut(s)	1538
TaaI	ACNGT	5 cut(s)	813, 871, 1210, 1238, 2099
TaiI	ACGT	3 cut(s)	414, 1582, 1726
TaqI	TCGA	5 cut(s)	261, 1071, 1478, 1704, 2025
TaqII	GACCGA	2 cut(s)	473, 1975
TauI	GCSGC	6 cut(s)	95, 458, 791, 1926, 1956, 2093
TfiI	GAWTC	2 cut(s)	198, 587
Tru1I	TTAA	6 cut(s)	66, 372, 450, 1175, 1448, 1599
Tru9I	TTAA	6 cut(s)	66, 372, 450, 1175, 1448, 1599
TscAI	CASTG	2 cut(s)	31, 1356
TseFI	GTSAC	3 cut(s)	317, 2035, 2141
Tsp45I	GTSAC	3 cut(s)	317, 2035, 2141
TspGWI	ACGGA	2 cut(s)	237, 1862
TspRI	CASTG	2 cut(s)	31, 1356
Tth111I	GACNNNGTC	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	1693
VneI	GTGCAC	1 cut(s)	1785
VpaK11BI	GGWCC	3 cut(s)	145, 1535, 1882
VspI	ATTAAT	1 cut(s)	450
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	2 cut(s)	1556, 1932
XceI	RCATGY	3 cut(s)	167, 1066, 1091
XmiI	GTMKAC	1 cut(s)	1071
XspI	CTAG	7 cut(s)	105, 506, 1136, 1152, 1310, 1391, 1434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.