RLG00000034606

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0030918
Physical Location & Seq
Reverse (-)
45925994 .. 45926489
496 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034606

Sequence Viewer

Length: 351 bp
ATGTCGGCCAAATCCTCGTCGGCGTGCAGGCCAACCTGGTTCACAGTCAGGGAAGGCTCTATTCTGGCACGGCCTTCAGCTCCGGCACGATCTCTCTCCCCTCTCTCACGGATCAGTGTCGTCATCATCGATGAGGGACTTTCTCCGGCAGGCCGGCGGAATCCGGCGATCAGTGGCCAGATTCATGTGAAGTCCTGGATCGGGTTCTTTTTCGCCAAGTCCTGGACCGAGTTCTTGGCCCAATTTAGGTTCCAAACGACGAAGCTCTTCTTGTTGGAGCTCGATGACACGATCCTGTCCGTCATCGAGTCGCCCACCATGTTTCAATTCAATTCTTCTGATTCGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.89

Weight (kDa)

9.61

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030918)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034606
rosa_roxburghii Rroxscaffold_2G00114900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AciI CCGC 1 cut(s) 157
AclWI GGATC 3 cut(s) 119, 206, 286
AcoI YGGCCR 2 cut(s) 6, 175
AcuI CTGAAG 1 cut(s) 60
AfiI CCNNNNNNNGG 3 cut(s) 201, 222, 246
AgsI TTSAA 2 cut(s) 326, 331
AjnI CCWGG 3 cut(s) 35, 194, 221
AluBI AGCT 3 cut(s) 80, 265, 280
AluI AGCT 3 cut(s) 80, 265, 280
Alw21I GWGCWC 1 cut(s) 282
AlwI GGATC 3 cut(s) 119, 206, 286
AoxI GGCC 6 cut(s) 6, 29, 71, 151, 175, 237
Asp700I GAANNNNTTC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 225, 238
AvaII GGWCC 1 cut(s) 225
BalI TGGCCA 1 cut(s) 177
BanII GRGCYC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 282
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 3 cut(s) 37, 196, 223
Bme1390I CCNGG 3 cut(s) 37, 196, 223
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 225, 238
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 3 cut(s) 37, 196, 223
Bsa29I ATCGAT 1 cut(s) 129
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 222, 246
Bse118I RCCGGY 1 cut(s) 153
BseBI CCWGG 3 cut(s) 37, 196, 223
BseCI ATCGAT 1 cut(s) 129
BseLI CCNNNNNNNGG 3 cut(s) 201, 222, 246
BsgI GTGCAG 1 cut(s) 46
BshFI GGCC 6 cut(s) 8, 31, 73, 153, 177, 239
BshVI ATCGAT 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 4 cut(s) 83, 146, 154, 164
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 3 cut(s) 201, 222, 246
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 6 cut(s) 8, 31, 73, 153, 177, 239
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 5 cut(s) 89, 111, 168, 198, 291
BspACI CCGC 1 cut(s) 157
BspANI GGCC 6 cut(s) 8, 31, 73, 153, 177, 239
BspDI ATCGAT 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 251
BspPI GGATC 3 cut(s) 119, 206, 286
BspQI GCTCTTC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 153
BssMI GATC 5 cut(s) 89, 111, 168, 198, 291
Bst2UI CCWGG 3 cut(s) 37, 196, 223
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 4 cut(s) 25, 29, 151, 155
BstKTI GATC 5 cut(s) 92, 114, 171, 201, 294
BstMBI GATC 5 cut(s) 89, 111, 168, 198, 291
BstNI CCWGG 3 cut(s) 37, 196, 223
BstSCI CCNGG 3 cut(s) 35, 194, 221
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 6 cut(s) 8, 31, 73, 153, 177, 239
BsuTUI ATCGAT 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 121, 178
Cac8I GCNNGC 4 cut(s) 25, 29, 151, 155
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 225, 238
ClaI ATCGAT 1 cut(s) 129
CsiI ACCWGGT 1 cut(s) 35
CviAII CATG 2 cut(s) 185, 319
DpnI GATC 5 cut(s) 91, 113, 170, 200, 293
DpnII GATC 5 cut(s) 89, 111, 168, 198, 291
EaeI YGGCCR 2 cut(s) 6, 175
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 280
EcoRII CCWGG 3 cut(s) 35, 194, 221
EcoT38I GRGCYC 1 cut(s) 282
FaeI CATG 2 cut(s) 188, 322
FaiI YATR 2 cut(s) 186, 320
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 1 cut(s) 150
FatI CATG 2 cut(s) 184, 318
FriOI GRGCYC 1 cut(s) 282
HaeIII GGCC 6 cut(s) 8, 31, 73, 153, 177, 239
HapII CCGG 4 cut(s) 83, 146, 154, 164
Hin1II CATG 2 cut(s) 188, 322
HinfI GANTC 4 cut(s) 160, 181, 308, 341
HpaII CCGG 4 cut(s) 83, 146, 154, 164
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 2 cut(s) 22, 262
HpyAV CCTTC 2 cut(s) 47, 84
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 27
Hsp92II CATG 2 cut(s) 188, 322
KroI GCCGGC 1 cut(s) 153
KroNI GCCGGC 1 cut(s) 155
Kzo9I GATC 5 cut(s) 89, 111, 168, 198, 291
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 2 cut(s) 85, 277
MabI ACCWGGT 1 cut(s) 35
MalI GATC 5 cut(s) 91, 113, 170, 200, 293
MboI GATC 5 cut(s) 89, 111, 168, 198, 291
MboII GAAGA 2 cut(s) 259, 327
MhlI GDGCHC 1 cut(s) 282
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 3 cut(s) 242, 326, 331
MluNI TGGCCA 1 cut(s) 177
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 3 cut(s) 25, 111, 127
Mox20I TGGCCA 1 cut(s) 177
MroNI GCCGGC 1 cut(s) 153
MroXI GAANNNNTTC 1 cut(s) 266
MscI TGGCCA 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 177
MspI CCGG 4 cut(s) 83, 146, 154, 164
MspR9I CCNGG 3 cut(s) 37, 196, 223
MvaI CCWGG 3 cut(s) 37, 196, 223
NaeI GCCGGC 1 cut(s) 155
NdeII GATC 5 cut(s) 89, 111, 168, 198, 291
NgoMIV GCCGGC 1 cut(s) 153
NlaIII CATG 2 cut(s) 188, 322
NlaIV GGNNCC 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdiI GCCGGC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 3 cut(s) 160, 181, 341
PflMI CCANNNNNTGG 1 cut(s) 222
PfoI TCCNGGA 2 cut(s) 194, 221
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 3 cut(s) 35, 194, 221
PspGI CCWGG 3 cut(s) 35, 194, 221
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 2 cut(s) 225, 238
SacI GAGCTC 1 cut(s) 282
SapI GCTCTTC 1 cut(s) 272
Sau3AI GATC 5 cut(s) 89, 111, 168, 198, 291
Sau96I GGNCC 2 cut(s) 225, 238
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 37, 196, 223
SduI GDGCHC 1 cut(s) 282
SetI ASST 5 cut(s) 38, 82, 251, 267, 282
SexAI ACCWGGT 1 cut(s) 35
SinI GGWCC 1 cut(s) 225
Sse9I AATT 3 cut(s) 242, 326, 331
SsiI CCGC 1 cut(s) 157
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 3 cut(s) 35, 194, 221
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 3 cut(s) 129, 282, 306
TaqII GACCGA 1 cut(s) 242
TasI AATT 3 cut(s) 242, 326, 331
TfiI GAWTC 3 cut(s) 160, 181, 341
TscAI CASTG 2 cut(s) 121, 178
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 2 cut(s) 124, 289
TspRI CASTG 2 cut(s) 121, 178
Van91I CCANNNNNTGG 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.