Rmu_co7973152.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7973152.1
OG0031618
Physical Location & Seq
Forward (+)
19 .. 405
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7973152.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
atgttttgtgaagatcaggaggtcaaaatgaaattcaagaatattttctttgtccatgtttcagaaaatcccagcttggattttattgtccaacaactatatgaacaaaaggattcagtggtacttgagctgcaagaagatgcagttaactggctgcaacagtttctaaaggaaacaggaggagatccttcgttgttggtcttggatgatgtttggtccggatcagaatctcttcttgataagtttgatggattaagaacttcaatgcacaagattttggtgacatcaagatctgaatttccacgatttgattgttatctagaaaacctaaaatcactggatgatgaagaggaaatggctcatcttaagggaaaggtaatttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

128

Amino Acids

14.88

Weight (kDa)

4.52

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031618)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co7973152.1_g000001
rosa_samantha Rh7CG082500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 218
AclWI GGATC 2 cut(s) 179, 229
AcsI RAATTY 2 cut(s) 32, 296
AfaI GTAC 1 cut(s) 123
AflII CTTAAG 1 cut(s) 365
AgsI TTSAA 2 cut(s) 37, 264
AluBI AGCT 2 cut(s) 75, 130
AluI AGCT 2 cut(s) 75, 130
AlwI GGATC 2 cut(s) 179, 229
Aor13HI TCCGGA 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 130, 154
ApoI RAATTY 2 cut(s) 32, 296
Asp700I GAANNNNTTC 2 cut(s) 44, 231
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 292
AvaII GGWCC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 117, 141
BccI CCATC 1 cut(s) 242
BfaI CTAG 1 cut(s) 320
BfrI CTTAAG 1 cut(s) 365
BglII AGATCT 1 cut(s) 290
BisI GCNGC 2 cut(s) 131, 155
BlsI GCNGC 2 cut(s) 132, 156
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmsI GCATC 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 146
BsaBI GATNNNNATC 2 cut(s) 226, 315
BsaWI WCCGGW 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 155, 342
Bse8I GATNNNNATC 2 cut(s) 226, 315
BseAI TCCGGA 1 cut(s) 218
BseGI GGATG 2 cut(s) 211, 346
BseJI GATNNNNATC 2 cut(s) 226, 315
BseNI ACTGG 2 cut(s) 155, 342
BseRI GAGGAG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 117, 141
BseYI CCCAGC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 219
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 4 cut(s) 13, 184, 221, 290
BspEI TCCGGA 1 cut(s) 218
BspPI GGATC 2 cut(s) 179, 229
BspTI CTTAAG 1 cut(s) 365
BsrI ACTGG 2 cut(s) 155, 342
BssMI GATC 4 cut(s) 13, 184, 221, 290
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 2 cut(s) 237, 342
BstAFI CTTAAG 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 2 cut(s) 211, 346
BstKTI GATC 4 cut(s) 16, 187, 224, 293
BstMBI GATC 4 cut(s) 13, 184, 221, 290
BstV1I GCAGC 2 cut(s) 117, 141
BstX2I RGATCY 2 cut(s) 184, 290
BstYI RGATCY 2 cut(s) 184, 290
BtsCI GGATG 2 cut(s) 211, 346
BtsIMutI CAGTG 2 cut(s) 123, 335
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 122
CviAII CATG 1 cut(s) 56
CviJI RGCY 4 cut(s) 75, 130, 154, 359
CviKI_1 RGCY 4 cut(s) 75, 130, 154, 359
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 1 cut(s) 384
DpnI GATC 4 cut(s) 15, 186, 223, 292
DpnII GATC 4 cut(s) 13, 184, 221, 290
Eam1104I CTCTTC 2 cut(s) 237, 342
EarI CTCTTC 2 cut(s) 237, 342
Eco47I GGWCC 1 cut(s) 216
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 57, 100, 102
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 131, 155
FokI GGATG 2 cut(s) 218, 353
Fsp4HI GCNGC 2 cut(s) 131, 155
FspBI CTAG 1 cut(s) 320
GluI GCNGC 2 cut(s) 131, 155
GsaI CCCAGC 1 cut(s) 75
HapII CCGG 1 cut(s) 219
Hin1II CATG 1 cut(s) 59
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 113, 227
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 64, 226, 295
Hpy188III TCNNGA 6 cut(s) 17, 37, 219, 236, 288, 320
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 4 cut(s) 133, 143, 157, 268
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 1 cut(s) 59
Kpn2I TCCGGA 1 cut(s) 218
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 4 cut(s) 13, 184, 221, 290
LpnPI CCDG 6 cut(s) 2, 85, 136, 162, 232, 323
Lsp1109I GCAGC 2 cut(s) 117, 141
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 280
MalI GATC 4 cut(s) 15, 186, 223, 292
MboI GATC 4 cut(s) 13, 184, 221, 290
MboII GAAGA 4 cut(s) 23, 149, 224, 359
MflI RGATCY 2 cut(s) 184, 290
MluCI AATT 3 cut(s) 32, 296, 378
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 3 cut(s) 13, 173, 343
MroI TCCGGA 1 cut(s) 218
MroXI GAANNNNTTC 2 cut(s) 44, 231
MseI TTAA 3 cut(s) 147, 254, 366
MspCI CTTAAG 1 cut(s) 365
MspI CCGG 1 cut(s) 219
NdeII GATC 4 cut(s) 13, 184, 221, 290
NlaIII CATG 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 280
PdmI GAANNNNTTC 2 cut(s) 44, 231
PfeI GAWTC 2 cut(s) 113, 227
PkrI GCNGC 2 cut(s) 132, 156
PspFI CCCAGC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 216
PsuI RGATCY 2 cut(s) 184, 290
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 3 cut(s) 147, 254, 366
SatI GCNGC 2 cut(s) 131, 155
Sau3AI GATC 4 cut(s) 13, 184, 221, 290
Sau96I GGNCC 1 cut(s) 216
SetI ASST 5 cut(s) 24, 77, 132, 330, 378
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 1 cut(s) 216
SmlI CTYRAG 2 cut(s) 125, 365
SmoI CTYRAG 2 cut(s) 125, 365
Sse9I AATT 3 cut(s) 32, 296, 378
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 162
TasI AATT 3 cut(s) 32, 296, 378
TfiI GAWTC 2 cut(s) 113, 227
Tru1I TTAA 3 cut(s) 147, 254, 366
Tru9I TTAA 3 cut(s) 147, 254, 366
TscAI CASTG 2 cut(s) 123, 342
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 130, 154
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 3 cut(s) 44, 117, 360
TspRI CASTG 2 cut(s) 123, 342
Vha464I CTTAAG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 2 cut(s) 32, 296
XbaI TCTAGA 1 cut(s) 319
XmnI GAANNNNTTC 2 cut(s) 44, 231
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.