Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7993486.1

Orthogroup ID

OG0025616

Physical Location & Seq

Genomic Coordinates Forward (+)

50 .. 409

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7993486.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgagatggcgtgctttaccttctctcaagttaaataccttgtcctctctcaagtgtctcctccttggagcaggtacacttggatgccaggttgctcgcatgcttatggcttggggcgttcagaaaattacgttggttgacaatggcagagtggctatgtctaatcccttgaggcaatccctgtatacattagatgactgtctaaatggtggtgaatttaaagctgtagcagcagttaacagtctcaagaaaatatttcccgctgtggtaattatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016043 GO:0016236 GO:0016237 GO:0016740 GO:0016874 GO:0016877 GO:0018410 GO:0019538 GO:0019778 GO:0019779 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0034645 GO:0034727 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04216 map04136 map04138 map04140 map04216

Pfam Domains

Protein Families

ATG7_N ThiF

Protein Analysis

92

Amino Acids

9.97

Weight (kDa)

9.94

Isoelectric Point (pI)

26.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025616)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co7993486.1_g000001 Rmu_sc0007421.1_g000013
rosa_samantha	Rh5DG078400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	185
AciI	CCGC	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	215
AfaI	GTAC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	62, 248
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	62, 248
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	74
BpuEI	CTTGAG	4 cut(s)	11, 35, 190, 230
BsaJI	CCNNGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	62, 248
BspACI	CCGC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	64
BssNAI	GTATAC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	64
Bst1107I	GTATAC	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	200, 242
BstC8I	GCNNGC	3 cut(s)	12, 97, 101
BstF5I	GGATG	1 cut(s)	89
BstMAI	GTCTC	2 cut(s)	62, 248
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	242
BstZ17I	GTATAC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	89
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	3 cut(s)	12, 97, 101
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	3 cut(s)	110, 155, 224
CviKI_1	RGCY	3 cut(s)	110, 155, 224
CviQI	GTAC	1 cut(s)	75
DraI	TTTAAA	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	103
FaiI	YATR	4 cut(s)	101, 107, 158, 186
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	103
HincII	GTYRAC	2 cut(s)	139, 238
HindII	GTYRAC	2 cut(s)	139, 238
HpaI	GTTAAC	1 cut(s)	238
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	4 cut(s)	77, 139, 186, 238
Hpy188I	TCNGA	2 cut(s)	123, 278
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	4 cut(s)	77, 139, 186, 238
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	200, 242
HpyCH4IV	ACGT	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	103
KspAI	GTTAAC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	4 cut(s)	57, 74, 101, 194
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	74
MaeII	ACGT	1 cut(s)	131
MluCI	AATT	3 cut(s)	126, 215, 270
MnlI	CCTC	3 cut(s)	55, 71, 165
MseI	TTAA	3 cut(s)	32, 219, 237
MslI	CAYNNNNRTG	2 cut(s)	82, 104
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	103
NspI	RCATGY	1 cut(s)	103
PaeI	GCATGC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	2 cut(s)	82, 104
SaqAI	TTAA	3 cut(s)	32, 219, 237
SatI	GCNGC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	6 cut(s)	22, 41, 76, 93, 134, 226
SfaNI	GCATC	1 cut(s)	74
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	82, 104
SmlI	CTYRAG	4 cut(s)	26, 50, 169, 245
SmoI	CTYRAG	4 cut(s)	26, 50, 169, 245
SphI	GCATGC	1 cut(s)	103
Sse9I	AATT	3 cut(s)	126, 215, 270
SsiI	CCGC	1 cut(s)	261
SspI	AATATT	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	200, 242
TaiI	ACGT	1 cut(s)	134
TasI	AATT	3 cut(s)	126, 215, 270
Tru1I	TTAA	3 cut(s)	32, 219, 237
Tru9I	TTAA	3 cut(s)	32, 219, 237
TseI	GCWGC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.