Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8032496.1

Orthogroup ID

OG0025491

Physical Location & Seq

Genomic Coordinates Reverse (-)

56 .. 409

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8032496.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgggggatttcaacctcgcgctcgtaatcgtcgccattatactggtggtcgttgtcttcatcttcaatgtctacctcctcgtcaattaccagcacccggacgacaagaaccaggcctactttcccaaattcgtcgtcgttttggggctctccgtcgccgcgatttccattctcatgttaccggcagacgtggccaaccggcaggcctgccgccacgcgatatacaatggcgcgtgtaatctcactcttccgatgaaggatctctggctcgccgtctatatcctcgacgccgtcctcgtcttcctcatcattcccttcgctatgttctactacgaaggcgaccaggacaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04977 map04977

Pfam Domains

Protein Families

LMBR1

Protein Analysis

117

Amino Acids

13.16

Weight (kDa)

4.95

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025491)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8032496.1_g000001 Rmu_co8091672.1_g000001 Rmu_sc0000766.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	4 cut(s)	20, 161, 218, 233
AciI	CCGC	2 cut(s)	159, 211
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	13, 67
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	111, 342
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	114, 192, 204
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspLEI	GCGC	2 cut(s)	22, 233
AsuC2I	CCSGG	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	49, 292
BceAI	ACGGC	2 cut(s)	257, 275
BciT130I	CCWGG	2 cut(s)	113, 344
BcnI	CCSGG	1 cut(s)	98
BisI	GCNGC	2 cut(s)	159, 211
BlsI	GCNGC	2 cut(s)	160, 212
Bme1390I	CCNGG	3 cut(s)	98, 113, 344
BmgBI	CACGTC	1 cut(s)	190
BmrFI	CCNGG	3 cut(s)	98, 113, 344
BpiI	GAAGAC	2 cut(s)	49, 292
BpuMI	CCSGG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse118I	RCCGGY	2 cut(s)	181, 198
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	113, 344
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	68
Bsh1236I	CGCG	4 cut(s)	20, 161, 218, 233
BshFI	GGCC	3 cut(s)	116, 194, 206
BsiSI	CCGG	3 cut(s)	98, 182, 199
BslI	CCNNNNNNNGG	1 cut(s)	97
BsnI	GGCC	3 cut(s)	116, 194, 206
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	2 cut(s)	159, 211
BspANI	GGCC	3 cut(s)	116, 194, 206
BspFNI	CGCG	4 cut(s)	20, 161, 218, 233
BspPI	GGATC	1 cut(s)	267
BsrFI	RCCGGY	2 cut(s)	181, 198
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	2 cut(s)	181, 198
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	113, 344
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	204, 208, 270
BstFNI	CGCG	4 cut(s)	20, 161, 218, 233
BstHHI	GCGC	2 cut(s)	22, 233
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	2 cut(s)	113, 344
BstSCI	CCNGG	3 cut(s)	96, 111, 342
BstUI	CGCG	4 cut(s)	20, 161, 218, 233
BstV2I	GAAGAC	2 cut(s)	49, 292
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	116, 194, 206
BtrI	CACGTC	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	204, 208, 270
CfoI	GCGC	2 cut(s)	22, 233
Cfr10I	RCCGGY	2 cut(s)	181, 198
CseI	GACGC	1 cut(s)	296
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	5 cut(s)	116, 148, 194, 206, 268
CviKI_1	RGCY	5 cut(s)	116, 148, 194, 206, 268
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco147I	AGGCCT	2 cut(s)	116, 206
Eco24I	GRGCYC	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	111, 342
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	178
FaiI	YATR	5 cut(s)	41, 176, 223, 279, 323
FatI	CATG	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	159, 211
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	159, 211
GlaI	GCGC	2 cut(s)	21, 232
GluI	GCNGC	2 cut(s)	159, 211
HaeIII	GGCC	3 cut(s)	116, 194, 206
HapII	CCGG	3 cut(s)	98, 182, 199
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	2 cut(s)	22, 233
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	2 cut(s)	20, 231
HinP1I	GCGC	2 cut(s)	20, 231
HpaII	CCGG	3 cut(s)	98, 182, 199
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	252
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	5 cut(s)	35, 137, 140, 158, 290
HpyAV	CCTTC	3 cut(s)	250, 325, 329
HpyCH4IV	ACGT	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	2 cut(s)	20, 231
Kzo9I	GATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	4 cut(s)	49, 55, 239, 292
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	150
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	2 cut(s)	85, 128
MluNI	TGGCCA	1 cut(s)	194
MnlI	CCTC	6 cut(s)	26, 86, 89, 293, 305, 314
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	3 cut(s)	98, 182, 199
MspR9I	CCNGG	3 cut(s)	98, 113, 344
MvaI	CCWGG	2 cut(s)	113, 344
MvnI	CGCG	4 cut(s)	20, 161, 218, 233
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	178
PceI	AGGCCT	2 cut(s)	116, 206
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	160, 212
Psp6I	CCWGG	2 cut(s)	111, 342
PspGI	CCWGG	2 cut(s)	111, 342
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
PsuI	RGATCY	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	173
SatI	GCNGC	2 cut(s)	159, 211
Sau3AI	GATC	1 cut(s)	259
ScrFI	CCNGG	3 cut(s)	98, 113, 344
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	3 cut(s)	18, 78, 192
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	85, 128
SseBI	AGGCCT	2 cut(s)	116, 206
SsiI	CCGC	2 cut(s)	159, 211
StuI	AGGCCT	2 cut(s)	116, 206
StyD4I	CCNGG	3 cut(s)	96, 111, 342
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	85, 128
TauI	GCSGC	2 cut(s)	161, 213
TspDTI	ATGAA	2 cut(s)	49, 269
TspGWI	ACGGA	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.