Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8046594.1

Orthogroup ID

OG0031344

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 261

Gene Structure 260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8046594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 260 bp

atggaagaagaagatgatctgtatatacctgtggcaaagcggagagcgatggcagcgcagaggattcttcaccggaaggggaatgcgtccgggcttgaagaggaatcggagaaagccaaggctgatgaagtgaagcctagtcttcttgtgaaagcttcacagttgaaacgtgatgctcctgagattactcaagccgagcagctggtgcagcaagagaaagagatgattgagcatttgtctgatcgcaagaccctcatgtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C zf-CCHC

Protein Analysis

87

Amino Acids

9.92

Weight (kDa)

5.42

Isoelectric Point (pI)

70.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031344)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8046594.1_g000001 Rmu_sc0005571.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	256
AciI	CCGC	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	98, 166
AluBI	AGCT	2 cut(s)	155, 202
AluI	AGCT	2 cut(s)	155, 202
ApeKI	GCWGC	3 cut(s)	53, 199, 208
AspLEI	GCGC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	65, 211, 220
BccI	CCATC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	91
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	3 cut(s)	54, 200, 209
BlsI	GCNGC	3 cut(s)	55, 201, 210
Bme1390I	CCNGG	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	3 cut(s)	65, 211, 220
BsgI	GTGCAG	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	73, 90
BsmI	GAATGC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	16, 241
BspACI	CCGC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	16, 241
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	19, 244
BstMBI	GATC	2 cut(s)	16, 241
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 205, 208
BstSCI	CCNGG	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	65, 211, 220
BstV2I	GAAGAC	1 cut(s)	134
BtgZI	GCGATG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	58
CseI	GACGC	1 cut(s)	75
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	7 cut(s)	94, 116, 122, 136, 155, 194, 202
CviKI_1	RGCY	7 cut(s)	94, 116, 122, 136, 155, 194, 202
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	18, 243
DpnII	GATC	2 cut(s)	16, 241
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	24, 26, 257
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	54, 200, 209
Fsp4HI	GCNGC	3 cut(s)	54, 200, 209
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	54, 200, 209
HapII	CCGG	2 cut(s)	73, 90
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	2 cut(s)	64, 104
HpaII	CCGG	2 cut(s)	73, 90
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	109, 241
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 205, 208
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	16, 241
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	5 cut(s)	42, 86, 103, 188, 192
Lsp1109I	GCAGC	3 cut(s)	65, 211, 220
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	169
MalI	GATC	2 cut(s)	18, 243
MboI	GATC	2 cut(s)	16, 241
MboII	GAAGA	6 cut(s)	17, 20, 23, 59, 110, 134
MnlI	CCTC	2 cut(s)	54, 94
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	2 cut(s)	73, 90
MspR9I	CCNGG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	53, 205, 208
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	2 cut(s)	16, 241
NlaIII	CATG	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	220
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	64, 104
PkrI	GCNGC	3 cut(s)	55, 201, 210
PvuII	CAGCTG	1 cut(s)	202
SatI	GCNGC	3 cut(s)	54, 200, 209
Sau3AI	GATC	2 cut(s)	16, 241
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	4 cut(s)	31, 157, 172, 204
SfaNI	GCATC	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	64, 104
TseI	GCWGC	3 cut(s)	53, 199, 208
TspDTI	ATGAA	1 cut(s)	141
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.