Rmu_co8064956.1_g000001

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8064956.1
OG0027557
Physical Location & Seq
Forward (+)
1 .. 497
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8064956.1_g000001.1.cds

Sequence Viewer

Length: 497 bp
tgtactccaactcgggccgggtccaggccagattcggattcggggccaagaagcgggccgcgcccaagaagtccaagtccactttcaccgaccgcccgctctggtaccctggagccaaggccccggagtggctcgacggcagcttggtcggcgactacggcttcgaccccttcggtttgggcaaacccgccgagtacttgcagtacgactacgatggtttggaccagaacctcgccaagaatttggcgggagatgtcattggtacccgtaccgaaacctctgacgtgtcctccacaccgttccagccctactctgaagtcttcgggctgcagaggttccgtgagtgcgagctcatccacggccgctgggccatgctcgccaccctcggcgccctcaccgtcgaatcactcaccggaattacatggcaagatgccggaaaggtaagcattacatcgcattttttcgagtttgtttgtttattttgtccaaggtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

164

Amino Acids

18.21

Weight (kDa)

6.91

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08940
rosa_multiflora Rmu_co8064956.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 104, 262
AccB1I GGYRCC 3 cut(s) 104, 262, 388
AccBSI CCGCTC 1 cut(s) 99
AccII CGCG 1 cut(s) 61
AciI CCGC 7 cut(s) 54, 59, 93, 97, 188, 247, 363
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 6 cut(s) 4, 106, 196, 205, 264, 270
AfiI CCNNNNNNNGG 3 cut(s) 24, 53, 128
AflIII ACRYGT 1 cut(s) 284
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 2 cut(s) 23, 108
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AluBI AGCT 2 cut(s) 143, 351
AluI AGCT 2 cut(s) 143, 351
Alw21I GWGCWC 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 7 cut(s) 15, 26, 44, 56, 119, 360, 368
ApeKI GCWGC 2 cut(s) 140, 327
ApoI RAATTY 1 cut(s) 240
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
Asp718I GGTACC 2 cut(s) 104, 262
AspLEI GCGC 2 cut(s) 63, 391
AspS9I GGNCC 7 cut(s) 15, 21, 44, 56, 120, 222, 368
AsuC2I CCSGG 2 cut(s) 19, 124
AsuHPI GGTGA 3 cut(s) 78, 387, 402
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 2 cut(s) 21, 222
BanI GGYRCC 3 cut(s) 104, 262, 388
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 152, 314
BccI CCATC 1 cut(s) 208
BceAI ACGGC 3 cut(s) 153, 174, 375
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 2 cut(s) 25, 110
BcnI CCSGG 2 cut(s) 19, 124
BfmI CTRYAG 1 cut(s) 328
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 4 cut(s) 59, 141, 328, 363
BlsI GCNGC 4 cut(s) 60, 142, 329, 364
BmcAI AGTACT 1 cut(s) 196
Bme1390I CCNGG 4 cut(s) 19, 25, 110, 124
Bme18I GGWCC 2 cut(s) 21, 222
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 7 cut(s) 15, 21, 44, 56, 120, 222, 368
BmiI GGNNCC 8 cut(s) 22, 45, 106, 114, 122, 264, 337, 390
BmrFI CCNGG 4 cut(s) 19, 25, 110, 124
BmsI GCATC 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 131
BpuMI CCSGG 2 cut(s) 19, 124
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 6 cut(s) 108, 116, 122, 357, 384, 487
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 53, 128
BseBI CCWGG 2 cut(s) 25, 110
BseDI CCNNGG 6 cut(s) 108, 116, 122, 357, 384, 487
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 3 cut(s) 24, 53, 128
BseX3I CGGCCG 1 cut(s) 360
BseXI GCAGC 2 cut(s) 152, 314
BseYI CCCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 2 cut(s) 93, 363
BshFI GGCC 7 cut(s) 17, 28, 46, 58, 121, 362, 370
BshNI GGYRCC 3 cut(s) 104, 262, 388
BsiEI CGRYCG 2 cut(s) 93, 363
BsiHKAI GWGCWC 1 cut(s) 353
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 4 cut(s) 18, 124, 413, 434
BslI CCNNNNNNNGG 3 cut(s) 24, 53, 128
BsnI GGCC 7 cut(s) 17, 28, 46, 58, 121, 362, 370
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 353
BspACI CCGC 7 cut(s) 54, 59, 93, 97, 188, 247, 363
BspANI GGCC 7 cut(s) 17, 28, 46, 58, 121, 362, 370
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 8 cut(s) 22, 45, 106, 114, 122, 264, 337, 390
BspMAI CTGCAG 1 cut(s) 332
BspT107I GGYRCC 3 cut(s) 104, 262, 388
BsrBI CCGCTC 1 cut(s) 99
BssECI CCNNGG 6 cut(s) 108, 116, 122, 357, 384, 487
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 116, 487
Bst2UI CCWGG 2 cut(s) 25, 110
Bst4CI ACNGT 2 cut(s) 299, 399
BstACI GRCGYC 1 cut(s) 389
BstC8I GCNNGC 4 cut(s) 56, 97, 349, 377
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 2 cut(s) 63, 391
BstMCI CGRYCG 2 cut(s) 93, 363
BstMWI GCNNNNNNNGC 4 cut(s) 60, 149, 158, 376
BstNI CCWGG 2 cut(s) 25, 110
BstSCI CCNGG 4 cut(s) 17, 23, 108, 122
BstSFI CTRYAG 1 cut(s) 328
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 152, 314
BstV2I GAAGAC 1 cut(s) 312
BstXI CCANNNNNNTGG 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 360
BsuRI GGCC 7 cut(s) 17, 28, 46, 58, 121, 362, 370
BtgI CCRYGG 1 cut(s) 357
BtgZI GCGATG 1 cut(s) 437
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 353
Cac8I GCNNGC 4 cut(s) 56, 97, 349, 377
CfoI GCGC 2 cut(s) 63, 391
Cfr13I GGNCC 7 cut(s) 15, 21, 44, 56, 120, 222, 368
Csp6I GTAC 6 cut(s) 3, 105, 195, 204, 263, 269
CviAII CATG 2 cut(s) 372, 422
CviQI GTAC 6 cut(s) 3, 105, 195, 204, 263, 269
DinI GGCGCC 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 360
EagI CGGCCG 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 351
EclXI CGGCCG 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 116, 487
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 21, 222
Eco52I CGGCCG 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 23, 108
EcoT14I CCWWGG 2 cut(s) 116, 487
EcoT38I GRGCYC 1 cut(s) 353
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
ErhI CCWWGG 2 cut(s) 116, 487
FaeI CATG 2 cut(s) 375, 425
FaiI YATR 2 cut(s) 373, 423
FatI CATG 2 cut(s) 371, 421
FauI CCCGC 4 cut(s) 47, 104, 195, 240
Fnu4HI GCNGC 4 cut(s) 59, 141, 328, 363
FokI GGATG 1 cut(s) 340
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 4 cut(s) 59, 141, 328, 363
GlaI GCGC 2 cut(s) 62, 390
GluI GCNGC 4 cut(s) 59, 141, 328, 363
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 7 cut(s) 17, 28, 46, 58, 121, 362, 370
HapII CCGG 4 cut(s) 18, 124, 413, 434
HhaI GCGC 2 cut(s) 63, 391
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 2 cut(s) 375, 425
Hin6I GCGC 2 cut(s) 61, 389
HinP1I GCGC 2 cut(s) 61, 389
HinfI GANTC 3 cut(s) 32, 38, 403
HpaII CCGG 4 cut(s) 18, 124, 413, 434
HphI GGTGA 3 cut(s) 78, 387, 402
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 3 cut(s) 37, 282, 315
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 2 cut(s) 139, 403
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 2 cut(s) 299, 399
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 2 cut(s) 201, 330
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 149, 158, 376
HpySE526I ACGT 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 2 cut(s) 375, 425
HspAI GCGC 2 cut(s) 61, 389
KasI GGCGCC 1 cut(s) 388
KpnI GGTACC 2 cut(s) 108, 266
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 2 cut(s) 152, 314
LweI GCATC 1 cut(s) 420
MaeII ACGT 1 cut(s) 284
MbiI CCGCTC 1 cut(s) 99
MboII GAAGA 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 2 cut(s) 240, 416
Mly113I GGCGCC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 6 cut(s) 241, 288, 300, 326, 394, 403
MseI TTAA 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 4 cut(s) 18, 124, 413, 434
MspR9I CCNGG 4 cut(s) 19, 25, 110, 124
MvaI CCWGG 2 cut(s) 25, 110
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 4 cut(s) 60, 149, 158, 376
NarI GGCGCC 1 cut(s) 389
NciI CCSGG 2 cut(s) 19, 124
NlaIII CATG 2 cut(s) 375, 425
NlaIV GGNNCC 8 cut(s) 22, 45, 106, 114, 122, 264, 337, 390
NmeAIII GCCGAG 2 cut(s) 216, 365
PfeI GAWTC 3 cut(s) 32, 38, 403
PkrI GCNGC 4 cut(s) 60, 142, 329, 364
PluTI GGCGCC 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 23, 108
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 2 cut(s) 23, 108
PspN4I GGNNCC 8 cut(s) 22, 45, 106, 114, 122, 264, 337, 390
PspPI GGNCC 7 cut(s) 15, 21, 44, 56, 120, 222, 368
PstI CTGCAG 1 cut(s) 332
RsaI GTAC 6 cut(s) 4, 106, 196, 205, 264, 270
RsaNI GTAC 6 cut(s) 3, 105, 195, 204, 263, 269
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 4 cut(s) 59, 141, 328, 363
Sau96I GGNCC 7 cut(s) 15, 21, 44, 56, 120, 222, 368
ScaI AGTACT 1 cut(s) 196
ScrFI CCNGG 4 cut(s) 19, 25, 110, 124
SduI GDGCHC 1 cut(s) 353
SetI ASST 8 cut(s) 145, 233, 280, 287, 337, 353, 443, 493
SfaNI GCATC 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 328
SfoI GGCGCC 1 cut(s) 390
SinI GGWCC 2 cut(s) 21, 222
Sse9I AATT 2 cut(s) 240, 416
SsiI CCGC 7 cut(s) 54, 59, 93, 97, 188, 247, 363
SspDI GGCGCC 1 cut(s) 388
SstI GAGCTC 1 cut(s) 353
StyD4I CCNGG 4 cut(s) 17, 23, 108, 122
StyI CCWWGG 2 cut(s) 116, 487
TaaI ACNGT 2 cut(s) 299, 399
TaiI ACGT 1 cut(s) 287
TaqI TCGA 4 cut(s) 134, 164, 401, 464
TasI AATT 2 cut(s) 240, 416
TatI WGTACW 2 cut(s) 2, 194
TauI GCSGC 2 cut(s) 61, 365
TfiI GAWTC 3 cut(s) 32, 38, 403
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TseI GCWGC 2 cut(s) 140, 327
TspGWI ACGGA 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 21, 222
XapI RAATTY 1 cut(s) 240
ZrmI AGTACT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.