Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8070654.1

Orthogroup ID

OG0031001

Physical Location & Seq

Genomic Coordinates Reverse (-)

67 .. 417

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8070654.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgaagctgttgtccaagattgccacgtgcgcggagggcaggtccgagataagcggggagccgaaatgcgtggcggcggtggcggagaggctgatgaaggggtcgatggcggcgacggaggacggcgtggcggttttgtggagcgtgtgttgcatgttgggggataagagggctagggagtgtgtagggaagagcaatggggtggctaagatattgctggtgatgcagagtgggtatggtgaagggcatttcatgaggaggatgtgtggggatttgatgaaggttttgagtgttgggttggggatggggttgagctatgacaccatgaccaaacatatcatgccttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

116

Amino Acids

12.39

Weight (kDa)

8.73

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031001)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8070654.1_g000001 Rmu_ssc0000059.1_g000025

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccII	CGCG	1 cut(s)	32
AciI	CCGC	7 cut(s)	32, 54, 74, 77, 83, 110, 131
AcvI	CACGTG	1 cut(s)	27
AluBI	AGCT	2 cut(s)	7, 315
AluI	AGCT	2 cut(s)	7, 315
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	232, 251
AvaII	GGWCC	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	27
BccI	CCATC	2 cut(s)	100, 298
BceAI	ACGGC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	30
BisI	GCNGC	2 cut(s)	75, 111
BlsI	GCNGC	2 cut(s)	76, 112
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	60
BmsI	GCATC	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	27
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 133, 163, 250, 280
Bse3DI	GCAATG	1 cut(s)	202
BseGI	GGATG	2 cut(s)	267, 309
BseMI	GCAATG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	32
BspACI	CCGC	7 cut(s)	32, 54, 74, 77, 83, 110, 131
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	267, 309
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 36, 80, 150, 223
BstNSI	RCATGY	1 cut(s)	157
BstUI	CGCG	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	267, 309
BveI	ACCTGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	42
CviAII	CATG	4 cut(s)	154, 253, 325, 340
CviJI	RGCY	6 cut(s)	7, 61, 91, 173, 206, 315
CviKI_1	RGCY	6 cut(s)	7, 61, 91, 173, 206, 315
DdeI	CTNAG	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	42
Eco72I	CACGTG	1 cut(s)	27
FaeI	CATG	4 cut(s)	157, 256, 328, 343
FaiI	YATR	7 cut(s)	155, 237, 254, 318, 326, 336, 341
FatI	CATG	4 cut(s)	153, 252, 324, 339
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	75, 111
FokI	GGATG	2 cut(s)	274, 316
Fsp4HI	GCNGC	2 cut(s)	75, 111
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	75, 111
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	157, 256, 328, 343
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HphI	GGTGA	2 cut(s)	232, 251
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	3 cut(s)	91, 236, 274
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	153, 226
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 36, 80, 150, 223
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	157, 256, 328, 343
HspAI	GCGC	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	58, 141
LpnPI	CCDG	2 cut(s)	25, 203
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	26
MboII	GAAGA	1 cut(s)	202
MnlI	CCTC	6 cut(s)	28, 81, 112, 162, 249, 252
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	29, 36, 80, 150, 223
NlaIII	CATG	4 cut(s)	157, 256, 328, 343
NlaIV	GGNNCC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	157
PagI	TCATGA	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	76, 112
PmaCI	CACGTG	1 cut(s)	27
PmlI	CACGTG	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	27
PspCI	CACGTG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	185
SatI	GCNGC	2 cut(s)	75, 111
Sau96I	GGNCC	1 cut(s)	42
SetI	ASST	5 cut(s)	9, 29, 44, 285, 317
SfaNI	GCATC	1 cut(s)	213
SinI	GGWCC	1 cut(s)	42
SsiI	CCGC	7 cut(s)	32, 54, 74, 77, 83, 110, 131
SspMI	CTAG	1 cut(s)	174
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	104
TauI	GCSGC	2 cut(s)	77, 113
TspDTI	ATGAA	4 cut(s)	17, 110, 241, 293
TspGWI	ACGGA	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	42
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.