Rmu_co8088232.1_g000001

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8088232.1
Physical Location & Seq
Forward (+)
1 .. 491
491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8088232.1_g000001.1.cds

Sequence Viewer

Length: 300 bp
aggaaattgtggtcctctgggagaacaacaattgctccacgtgcattcaagggaaaacttgctcgatttgctcctcagtttagtggttataatcagcatgactctcaggaacttcttgctttcttactggatggactgcatgaagatttgaatcgtgtcaaaaataagccctacattgaaacaaaggattcagatggtcgtccggatgaggaagttgcagatgagtgttggaaaaatcacaaggcccggaatgattcattgattgtggatgtttgccaagtaagcagtatatcactgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.27

Weight (kDa)

7.02

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021243)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 202
AcvI CACGTG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 49, 151, 179
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 12, 244
AsuC2I CCSGG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 12
BbrPI CACGTG 1 cut(s) 41
BccI CCATC 2 cut(s) 125, 188
BcnI CCSGG 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 2 cut(s) 12, 244
BmrFI CCNGG 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bse1I ACTGG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 202
BseGI GGATG 3 cut(s) 136, 211, 274
BseJI GATNNNNATC 1 cut(s) 150
BseMII CTCAG 2 cut(s) 89, 119
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 203, 247
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 1 cut(s) 245
Bsp13I TCCGGA 1 cut(s) 202
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 2 cut(s) 88, 118
BspEI TCCGGA 1 cut(s) 202
BsrI ACTGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 75, 105
BstF5I GGATG 3 cut(s) 136, 211, 274
BstMWI GCNNNNNNNGC 3 cut(s) 41, 68, 282
BstSCI CCNGG 1 cut(s) 245
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 3 cut(s) 136, 211, 274
BtsIMutI CAGTG 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 12, 244
CviAII CATG 2 cut(s) 98, 140
CviJI RGCY 2 cut(s) 169, 245
CviKI_1 RGCY 2 cut(s) 169, 245
DdeI CTNAG 2 cut(s) 75, 105
Eco47I GGWCC 1 cut(s) 12
Eco72I CACGTG 1 cut(s) 41
FaeI CATG 2 cut(s) 101, 143
FaiI YATR 4 cut(s) 90, 99, 141, 290
FatI CATG 2 cut(s) 97, 139
FokI GGATG 3 cut(s) 143, 218, 281
HaeIII GGCC 1 cut(s) 245
HapII CCGG 2 cut(s) 203, 247
Hin1II CATG 2 cut(s) 101, 143
HinfI GANTC 4 cut(s) 101, 151, 188, 254
HpaII CCGG 2 cut(s) 203, 247
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 107, 203
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 3 cut(s) 44, 139, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 68, 282
HpyF3I CTNAG 2 cut(s) 75, 105
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 2 cut(s) 101, 143
Kpn2I TCCGGA 1 cut(s) 202
LmnI GCTCC 2 cut(s) 40, 76
LpnPI CCDG 5 cut(s) 3, 92, 113, 216, 260
MaeII ACGT 1 cut(s) 40
MboII GAAGA 1 cut(s) 155
MfeI CAATTG 1 cut(s) 30
MluCI AATT 2 cut(s) 5, 30
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 3 cut(s) 25, 84, 202
MroI TCCGGA 1 cut(s) 202
MspI CCGG 2 cut(s) 203, 247
MspR9I CCNGG 1 cut(s) 247
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 41, 68, 282
NciI CCSGG 1 cut(s) 247
NlaIII CATG 2 cut(s) 101, 143
PctI GAATGC 1 cut(s) 44
PfeI GAWTC 3 cut(s) 151, 188, 254
PleI GAGTC 1 cut(s) 95
PmaCI CACGTG 1 cut(s) 41
PmlI CACGTG 1 cut(s) 41
PpsI GAGTC 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 41
PsiI TTATAA 1 cut(s) 90
PspCI CACGTG 1 cut(s) 41
PspPI GGNCC 2 cut(s) 12, 244
Sau96I GGNCC 2 cut(s) 12, 244
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 247
SetI ASST 1 cut(s) 43
SinI GGWCC 1 cut(s) 12
Sse9I AATT 2 cut(s) 5, 30
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 64
TasI AATT 2 cut(s) 5, 30
TfiI GAWTC 3 cut(s) 151, 188, 254
TscAI CASTG 1 cut(s) 300
TspDTI ATGAA 2 cut(s) 156, 246
TspRI CASTG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.