Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8102758.1

Orthogroup ID

OG0031369

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 569

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8102758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgttaacagttatacaagatgctaattttgctcttctttccaacatttctcaggaacttaatttacaagcggctgttgtgaataggttgcagactgttggtttaaggttctgtggagctgcagatcaggcacttcctagacttaggggagccctgccaaacgataaaccaacacggaaggcacttgatgagttgtcagatctctgtagctacttgagagcttggaggattgaagaacatgtttatatagatccacttatccccccaactgagagttatcatagagacttgtttttccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009636 GO:0009719 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010447 GO:0014070 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034198 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0042594 GO:0046677 GO:0050896 GO:0051716 GO:0060992 GO:0070301 GO:0070887 GO:0071214 GO:0071236 GO:0071310 GO:0071407 GO:0071417 GO:0071467 GO:0071468 GO:0071495 GO:0071496 GO:0072755 GO:0097237 GO:0104004 GO:1901561 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1990451 GO:1990928

KEGG Pathways

Metabolic & Signaling

ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169

Pfam Domains

Protein Families

HGTP_anticodon2 Pkinase RWD tRNA-synt_His

Protein Analysis

100

Amino Acids

11.37

Weight (kDa)

5.56

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031369)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8102758.1_g000001 Rmu_sc0006408.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	3 cut(s)	119, 210, 221
AluI	AGCT	3 cut(s)	119, 210, 221
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	2 cut(s)	120, 205
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	72, 120
BlsI	GCNGC	2 cut(s)	73, 121
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	65, 261
BseXI	GCAGC	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	124, 199, 250
BspACI	CCGC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	64, 262
BspLI	GGNNCC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	39
BssMI	GATC	3 cut(s)	124, 199, 250
Bst4CI	ACNGT	2 cut(s)	10, 97
Bst6I	CTCTTC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	51, 143, 270
BstKTI	GATC	3 cut(s)	127, 202, 253
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	3 cut(s)	124, 199, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 128
BstNSI	RCATGY	1 cut(s)	242
BstSFI	CTRYAG	2 cut(s)	120, 205
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	2 cut(s)	199, 250
BstYI	RGATCY	2 cut(s)	199, 250
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	5 cut(s)	74, 119, 152, 210, 221
CviKI_1	RGCY	5 cut(s)	74, 119, 152, 210, 221
DdeI	CTNAG	3 cut(s)	51, 143, 270
DpnI	GATC	3 cut(s)	126, 201, 252
DpnII	GATC	3 cut(s)	124, 199, 250
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	1 cut(s)	242
FaiI	YATR	5 cut(s)	14, 240, 246, 248, 282
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	72, 120
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	72, 120
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	2 cut(s)	72, 120
Hin1II	CATG	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaI	GTTAAC	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	10, 97
HpyCH4V	TGCA	2 cut(s)	91, 122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 128
HpyF3I	CTNAG	3 cut(s)	51, 143, 270
Hsp92II	CATG	1 cut(s)	242
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	124, 199, 250
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	116, 149
LpnPI	CCDG	3 cut(s)	38, 113, 167
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	138
MalI	GATC	3 cut(s)	126, 201, 252
MboI	GATC	3 cut(s)	124, 199, 250
MboII	GAAGA	2 cut(s)	26, 245
MflI	RGATCY	2 cut(s)	199, 250
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	25, 61
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	1 cut(s)	219
MseI	TTAA	3 cut(s)	5, 60, 104
MwoI	GCNNNNNNNGC	2 cut(s)	29, 128
NdeII	GATC	3 cut(s)	124, 199, 250
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	242
PciI	ACATGT	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	73, 121
PscI	ACATGT	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	151
PsrI	GAACNNNNNNTAC	2 cut(s)	48, 80
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	199, 250
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	5, 60, 104
SatI	GCNGC	2 cut(s)	72, 120
Sau3AI	GATC	3 cut(s)	124, 199, 250
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	5 cut(s)	89, 110, 121, 212, 223
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	2 cut(s)	120, 205
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	25, 61
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	10, 97
TasI	AATT	2 cut(s)	25, 61
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	5, 60, 104
Tru9I	TTAA	3 cut(s)	5, 60, 104
TseI	GCWGC	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	190
XceI	RCATGY	1 cut(s)	242
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.