Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8155438.1

Orthogroup ID

OG0030997

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 656

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8155438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 613 bp

cgagacgatgaagtcgatccattagagaaggaacatagtgatgggtttgatgataaggaaaatgacgtcaaacaacctgatttcagtgagggtgcaaagcttgtggattcagctcttgaatcgggaaagatttaccaagaacaaggctccaagtacatcaaggaagtgtttgagaccggaaccttgcatctcattgggttgttgagtgatggtggagtccattctcggcttgatcaagttcagttgttgctcaaaggagttgctgagcatggtgctaagaggatccgccttcatgttcttactgatggtcgtgatgttctagatggatcaagtgtgaaatttgctggaacacttgacgaggaccttgcacagttacgtgagaaaggtgtggatgcacaaattgcatctggtggaggtcgcatttatgtcaccatggattgttatgagaatgactggtcagttgtaaaacgaggatgggatgcccaagttcttggtgaagccccctctaaatttaagaatgttgttgaagctatcaagacattgagagcagaaccaaatgccaatgaccagtatctacctccttttgttattgttgacgacagtggaaagcctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

204

Amino Acids

22.44

Weight (kDa)

4.75

Isoelectric Point (pI)

18.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030997)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8155438.1_g000001 Rmu_ssc0000014.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AatII	GACGTC	1 cut(s)	69
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	4 cut(s)	11, 277, 290, 334
AcsI	RAATTY	2 cut(s)	338, 509
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	119, 527
AluBI	AGCT	3 cut(s)	100, 113, 530
AluI	AGCT	3 cut(s)	100, 113, 530
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	4 cut(s)	11, 277, 290, 334
ApoI	RAATTY	2 cut(s)	338, 509
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	421, 506
AvaII	GGWCC	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	282
BccI	CCATC	5 cut(s)	35, 203, 299, 317, 468
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	320
BlpI	GCTNAGC	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	3 cut(s)	148, 181, 284
BmsI	GCATC	4 cut(s)	196, 382, 413, 469
Bpu1102I	GCTNAGC	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	458, 568
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	3 cut(s)	397, 479, 484
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	458, 568
BsiSI	CCGG	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	16, 232, 282, 326
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	148, 181, 284
BspPI	GGATC	4 cut(s)	11, 277, 290, 334
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	458, 568
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	4 cut(s)	16, 232, 282, 326
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	372, 602
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	377
BstDEI	CTNAG	2 cut(s)	264, 276
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	3 cut(s)	397, 479, 484
BstKTI	GATC	4 cut(s)	19, 235, 285, 329
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	4 cut(s)	16, 232, 282, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	3 cut(s)	397, 479, 484
BtsIMutI	CAGTG	2 cut(s)	91, 607
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	154
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	3 cut(s)	269, 293, 433
CviJI	RGCY	7 cut(s)	100, 113, 147, 229, 500, 530, 610
CviKI_1	RGCY	7 cut(s)	100, 113, 147, 229, 500, 530, 610
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	264, 276
DpnI	GATC	4 cut(s)	18, 234, 284, 328
DpnII	GATC	4 cut(s)	16, 232, 282, 326
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	3 cut(s)	272, 296, 436
FaiI	YATR	6 cut(s)	36, 270, 294, 426, 434, 444
FatI	CATG	3 cut(s)	268, 292, 432
FbaI	TGATCA	1 cut(s)	232
FokI	GGATG	3 cut(s)	404, 486, 491
FspBI	CTAG	1 cut(s)	320
HapII	CCGG	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	272, 296, 436
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	3 cut(s)	107, 119, 216
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	421, 506
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188III	TCNNGA	5 cut(s)	116, 123, 311, 320, 535
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	2 cut(s)	22, 299
HpyCH4III	ACNGT	2 cut(s)	372, 602
HpyCH4IV	ACGT	2 cut(s)	66, 376
HpyCH4V	TGCA	5 cut(s)	95, 187, 368, 395, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	2 cut(s)	264, 276
HpySE526I	ACGT	2 cut(s)	66, 376
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	272, 296, 436
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	16, 232, 282, 326
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	6 cut(s)	90, 190, 330, 393, 439, 581
LweI	GCATC	4 cut(s)	196, 382, 413, 469
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	66, 376
MaeIII	GTNAC	2 cut(s)	372, 427
MalI	GATC	4 cut(s)	18, 234, 284, 328
MboI	GATC	4 cut(s)	16, 232, 282, 326
MflI	RGATCY	1 cut(s)	282
MluCI	AATT	3 cut(s)	338, 399, 509
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	7 cut(s)	82, 273, 352, 407, 464, 514, 588
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	4 cut(s)	16, 232, 282, 326
NlaIII	CATG	3 cut(s)	272, 296, 436
NlaIV	GGNNCC	3 cut(s)	148, 181, 284
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	107, 119
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	148, 181, 284
PspPI	GGNCC	1 cut(s)	361
PspPPI	RGGWCCY	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	282
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	513
Sau3AI	GATC	4 cut(s)	16, 232, 282, 326
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	225
SfaNI	GCATC	4 cut(s)	196, 382, 413, 469
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	338, 399, 509
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	372, 602
TaiI	ACGT	2 cut(s)	69, 379
TaqI	TCGA	1 cut(s)	15
TasI	AATT	3 cut(s)	338, 399, 509
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	107, 119
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	2 cut(s)	91, 607
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	24, 281
TspRI	CASTG	2 cut(s)	91, 607
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	2 cut(s)	338, 509
XbaI	TCTAGA	1 cut(s)	319
XspI	CTAG	1 cut(s)	320
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.