Rmu_co8155862.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8155862.1
OG0031379
Physical Location & Seq
Forward (+)
1 .. 577
577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8155862.1_g000001.1.cds

Sequence Viewer

Length: 430 bp
tgttcgtgtgaagaagggaggctcgtggggttttcagcgagccatgcttctcctgaatgattatgatggcttctcggagatctctaccgtgaagatggaatttgtttggattctggttacgttggaaggcatacctccgggcattttgatagaacctactgtccggttggtgggaaagacaattggtgaggttgtggaggtgaatcgtatggcgctgcgtaggggagatgcctggcgttgtcctagggtggatgactcagagactgattctgtggtggagacaggagggcattcggcaacagggccgttcgttccagcccttgtccttagggccaacgttcatccttcaatttcttcttcactgctttctgccttcaaggttcccaatttgctgaagaagaaacctgtgcagatccgagagcttccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

142

Amino Acids

15.61

Weight (kDa)

9.25

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031379)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8155862.1_g000001 Rmu_sc0006833.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 337
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 2 cut(s) 349, 377
AjnI CCWGG 1 cut(s) 231
AloI GAACNNNNNNTCC 2 cut(s) 145, 177
AluBI AGCT 1 cut(s) 422
AluI AGCT 1 cut(s) 422
Alw26I GTCTC 2 cut(s) 255, 273
AlwI GGATC 1 cut(s) 407
AlwNI CAGNNNCTG 1 cut(s) 264
AoxI GGCC 2 cut(s) 303, 331
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 99
AspA2I CCTAGG 1 cut(s) 243
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 303, 331
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 198, 212
AvrII CCTAGG 1 cut(s) 243
AxyI CCTNAGG 1 cut(s) 327
BauI CACGAG 1 cut(s) 23
BbvI GCAGC 1 cut(s) 202
BccI CCATC 2 cut(s) 60, 89
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 233
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 255, 273
BfaI CTAG 1 cut(s) 244
BfoI RGCGCY 1 cut(s) 216
BglII AGATCT 1 cut(s) 79
BisI GCNGC 1 cut(s) 216
BlnI CCTAGG 1 cut(s) 243
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 139, 233
BmgT120I GGNCC 2 cut(s) 303, 331
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 2 cut(s) 139, 233
BmsI GCATC 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse21I CCTNAGG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 257, 341
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 429
BshFI GGCC 2 cut(s) 305, 333
BsiSI CCGG 2 cut(s) 138, 164
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 255, 273
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 305, 333
Bsp143I GATC 2 cut(s) 79, 412
BspANI GGCC 2 cut(s) 305, 333
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 382
BspPI GGATC 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 2 cut(s) 79, 412
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 89, 161
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 257, 327
BstF5I GGATG 2 cut(s) 257, 341
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 2 cut(s) 82, 415
BstMAI GTCTC 2 cut(s) 255, 273
BstMBI GATC 2 cut(s) 79, 412
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 137, 231
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 2 cut(s) 79, 412
BstYI RGATCY 2 cut(s) 79, 412
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 2 cut(s) 305, 333
BtsCI GGATG 2 cut(s) 257, 341
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 40
CaiI CAGNNNCTG 1 cut(s) 264
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 303, 331
CviAII CATG 1 cut(s) 44
CviJI RGCY 7 cut(s) 22, 42, 70, 305, 318, 333, 422
CviKI_1 RGCY 7 cut(s) 22, 42, 70, 305, 318, 333, 422
DdeI CTNAG 2 cut(s) 257, 327
DpnI GATC 2 cut(s) 81, 414
DpnII GATC 2 cut(s) 79, 412
Eco130I CCWWGG 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 414
Eco81I CCTNAGG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 1 cut(s) 47
FaiI YATR 5 cut(s) 45, 64, 132, 210, 428
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 264, 328
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 244
GlaI GCGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 305, 333
HapII CCGG 2 cut(s) 138, 164
HhaI GCGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 47
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 4 cut(s) 110, 203, 255, 267
HpaII CCGG 2 cut(s) 138, 164
HphI GGTGA 2 cut(s) 198, 212
Hpy188I TCNGA 3 cut(s) 77, 260, 417
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 8, 120, 355, 383
HpyCH4III ACNGT 2 cut(s) 89, 161
HpyCH4IV ACGT 2 cut(s) 120, 337
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 257, 327
HpySE526I ACGT 2 cut(s) 120, 337
Hsp92II CATG 1 cut(s) 47
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 79, 412
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 244
MaeII ACGT 2 cut(s) 120, 337
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 81, 414
MboI GATC 2 cut(s) 79, 412
MboII GAAGA 6 cut(s) 23, 104, 346, 349, 407, 410
MfeI CAATTG 1 cut(s) 181
MflI RGATCY 2 cut(s) 79, 412
MluCI AATT 4 cut(s) 99, 181, 349, 386
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 5 cut(s) 12, 145, 182, 191, 279
MspI CCGG 2 cut(s) 138, 164
MspR9I CCNGG 2 cut(s) 139, 233
MunI CAATTG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 139
NdeII GATC 2 cut(s) 79, 412
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 382
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 3 cut(s) 110, 203, 267
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
Psp1406I AACGTT 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 2 cut(s) 303, 331
PstNI CAGNNNCTG 1 cut(s) 264
PsuI RGATCY 2 cut(s) 79, 412
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 2 cut(s) 79, 412
Sau96I GGNCC 2 cut(s) 303, 331
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 139, 233
SetI ASST 9 cut(s) 123, 137, 158, 193, 202, 340, 382, 407, 424
SfaNI GCATC 1 cut(s) 218
Sse9I AATT 4 cut(s) 99, 181, 349, 386
SspMI CTAG 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 137, 231
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 89, 161
TaiI ACGT 2 cut(s) 123, 340
TasI AATT 4 cut(s) 99, 181, 349, 386
TfiI GAWTC 3 cut(s) 110, 203, 267
TscAI CASTG 1 cut(s) 367
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 1 cut(s) 367
XapI RAATTY 1 cut(s) 99
XmaJI CCTAGG 1 cut(s) 243
XspI CTAG 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.