Rmu_co8166076.1_g000001

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8166076.1
Physical Location & Seq
Forward (+)
1 .. 582
582 bp
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UTR
Exon/CDS
Intron
Rmu_co8166076.1_g000001.1.cds

Sequence Viewer

Length: 302 bp
attgcagtggagatgatcggagtgaaaaatctccagagatggcattcacaaataagaaatctgctcttctacagcttgtggagggaagtccagttcccaaaacaattgtcttttgtaacaagattgagacatgcagaaaagttgagaatgtactatcacgctttgacagaagtggaactcgtgttcaagttctaccatttcattctgctctggctcaagaatcacggcttgcaaacatgaaggagttcaccaattctcattcagagaaagtagcacagtttttggtctgcactgataggtaa

Protein Analysis

99

Amino Acids

11.12

Weight (kDa)

8.81

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031384)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8166076.1_g000001 Rmu_sc0007108.1_g000009

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 1 cut(s) 187
AloI GAACNNNNNNTCC 4 cut(s) 77, 109, 167, 199
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 121
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp700I GAANNNNTTC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 240
BauI CACGAG 1 cut(s) 179
BccI CCATC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 91
BssMI GATC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 230
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 290
Cac8I GCNNGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 151
CviAII CATG 2 cut(s) 131, 237
CviJI RGCY 3 cut(s) 75, 214, 228
CviKI_1 RGCY 3 cut(s) 75, 214, 228
CviQI GTAC 1 cut(s) 151
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
FaeI CATG 2 cut(s) 134, 240
FaiI YATR 2 cut(s) 132, 238
FatI CATG 2 cut(s) 130, 236
GsuI CTGGAG 1 cut(s) 17
Hin1II CATG 2 cut(s) 134, 240
HinfI GANTC 1 cut(s) 220
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 20, 264
Hpy188III TCNNGA 2 cut(s) 34, 217
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 5, 134, 232, 290
Hsp92II CATG 2 cut(s) 134, 240
Kzo9I GATC 1 cut(s) 15
LguI GCTCTTC 1 cut(s) 71
LpnPI CCDG 3 cut(s) 47, 104, 196
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 1 cut(s) 58
MfeI CAATTG 1 cut(s) 104
MluCI AATT 2 cut(s) 104, 252
MnlI CCTC 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 244
MunI CAATTG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 43
NdeII GATC 1 cut(s) 15
NlaIII CATG 2 cut(s) 134, 240
NspI RCATGY 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 71
PctI GAATGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 220
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 15
SetI ASST 2 cut(s) 77, 301
SfcI CTRYAG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 104, 252
TaaI ACNGT 1 cut(s) 278
TasI AATT 2 cut(s) 104, 252
TatI WGTACW 1 cut(s) 150
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 2 cut(s) 12, 297
TspDTI ATGAA 2 cut(s) 190, 253
TspRI CASTG 2 cut(s) 12, 297
XceI RCATGY 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.