Rmu_co8184576.1_g000001

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8184576.1
OG0029187
Physical Location & Seq
Forward (+)
93 .. 449
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8184576.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
atgagacgccacctcgtctcttcctcctattctcctctcttctctcttcaaatttcccacctcttacgctcttcttcatcagccaagcatttcagcacttactacaattcttcaagacgagacgaggagattcggaacgtgagggtttcggtgtggtgggacttcgagaattgccatttgccggccaccgtcaagcccttcaaggtcgccggtacgatcacggcggccgtcagggccaatgggattaagggtcctattcaaatcaacgcttttggggacatgtttcagctatcaagactcaaccaggaggcattgtcctctacagggattaatctcactcacgttcctagcggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN OHA OST-HTH

Protein Analysis

118

Amino Acids

13.19

Weight (kDa)

10.11

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029187)

Species Orthologous Gene IDs
pyrus_communis pycom01g03030
rosa_multiflora Rmu_co8184576.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 224, 351
AcoI YGGCCR 2 cut(s) 183, 225
AcsI RAATTY 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 181, 324
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 4 cut(s) 50, 114, 202, 260
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw26I GTCTC 2 cut(s) 22, 114
AoxI GGCC 3 cut(s) 183, 225, 234
ApoI RAATTY 1 cut(s) 51
AseI ATTAAT 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 234, 251
AvaII GGWCC 1 cut(s) 251
BceAI ACGGC 2 cut(s) 212, 237
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 22, 114
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 321
BglI GCCNNNNNGGC 1 cut(s) 233
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 234, 251
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 324
Bse118I RCCGGY 2 cut(s) 181, 209
BseBI CCWGG 1 cut(s) 305
BseLI CCNNNNNNNGG 2 cut(s) 181, 324
BseRI GAGGAG 2 cut(s) 24, 140
BseX3I CGGCCG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 3 cut(s) 185, 227, 236
BsiEI CGRYCG 1 cut(s) 228
BsiSI CCGG 2 cut(s) 182, 210
BslFI GGGAC 2 cut(s) 173, 290
BslI CCNNNNNNNGG 2 cut(s) 181, 324
BsmAI GTCTC 2 cut(s) 22, 114
BsmBI CGTCTC 2 cut(s) 22, 114
BsmFI GGGAC 2 cut(s) 173, 290
BsnI GGCC 3 cut(s) 185, 227, 236
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 2 cut(s) 224, 351
BspANI GGCC 3 cut(s) 185, 227, 236
BspLI GGNNCC 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 76
BsrFI RCCGGY 2 cut(s) 181, 209
BssAI RCCGGY 2 cut(s) 181, 209
BssMI GATC 1 cut(s) 216
BssNI GRCGYC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 4 cut(s) 25, 44, 51, 76
BstACI GRCGYC 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 2 cut(s) 22, 114
BstMBI GATC 1 cut(s) 216
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 321
BstZI CGGCCG 1 cut(s) 225
BsuRI GGCC 3 cut(s) 185, 227, 236
Cac8I GCNNGC 1 cut(s) 183
Cfr10I RCCGGY 2 cut(s) 181, 209
Cfr13I GGNCC 2 cut(s) 234, 251
CseI GACGC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 280
CviJI RGCY 6 cut(s) 83, 185, 196, 227, 236, 289
CviKI_1 RGCY 6 cut(s) 83, 185, 196, 227, 236, 289
CviQI GTAC 1 cut(s) 213
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 183, 225
EagI CGGCCG 1 cut(s) 225
Eam1104I CTCTTC 4 cut(s) 25, 44, 51, 76
EarI CTCTTC 4 cut(s) 25, 44, 51, 76
EclXI CGGCCG 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 251
Eco52I CGGCCG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 303
Esp3I CGTCTC 2 cut(s) 22, 114
FaeI CATG 1 cut(s) 283
FaiI YATR 1 cut(s) 281
FaqI GGGAC 2 cut(s) 173, 290
FatI CATG 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 3 cut(s) 185, 227, 236
HapII CCGG 2 cut(s) 182, 210
HgaI GACGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 1 cut(s) 283
HinfI GANTC 2 cut(s) 130, 297
HpaII CCGG 2 cut(s) 182, 210
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 3 cut(s) 114, 166, 294
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 2 cut(s) 138, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 138, 342
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 1 cut(s) 283
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 1 cut(s) 216
LguI GCTCTTC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 195, 217, 223, 290, 309, 317
MaeI CTAG 1 cut(s) 348
MaeII ACGT 2 cut(s) 138, 342
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 6 cut(s) 12, 31, 38, 63, 66, 102
MluCI AATT 3 cut(s) 51, 106, 169
MlyI GAGTC 1 cut(s) 291
MnlI CCTC 8 cut(s) 23, 34, 45, 71, 118, 135, 301, 328
MroNI GCCGGC 1 cut(s) 181
MseI TTAA 2 cut(s) 246, 330
MspI CCGG 2 cut(s) 182, 210
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 233
NaeI GCCGGC 1 cut(s) 183
NdeII GATC 1 cut(s) 216
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 252
NspI RCATGY 1 cut(s) 283
PciI ACATGT 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
PpuMI RGGWCCY 1 cut(s) 251
PscI ACATGT 1 cut(s) 279
PshBI ATTAAT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 234, 251
PspPPI RGGWCCY 1 cut(s) 251
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 76
SaqAI TTAA 2 cut(s) 246, 330
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 2 cut(s) 234, 251
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 305
SetI ASST 6 cut(s) 15, 63, 141, 207, 291, 345
SfcI CTRYAG 1 cut(s) 321
SfiI GGCCNNNNNGGCC 1 cut(s) 233
SinI GGWCC 1 cut(s) 251
Sse9I AATT 3 cut(s) 51, 106, 169
SsiI CCGC 2 cut(s) 224, 351
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 2 cut(s) 141, 345
TaqI TCGA 1 cut(s) 165
TasI AATT 3 cut(s) 51, 106, 169
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 2 cut(s) 246, 330
Tru9I TTAA 2 cut(s) 246, 330
TspDTI ATGAA 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 251
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 283
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.