Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8213570.1

Orthogroup ID

OG0031247

Physical Location & Seq

Genomic Coordinates Reverse (-)

366 .. 705

Gene Structure 340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8213570.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgaaggatccagttatcttgccttcttcaagaatcacagtagaccggcctgtcattcaaaggcatcttcttagtgataatagtgatccattcaaccgttcccatcttactgcggacatgttgataccggataatgatttgaaggcaaaaatacaagagtttattaggtcgcaacagtcgaagcgcggggaaagccttagcatgcagagtgataaggcaacaatacaaaccacatctagtgaaatgctaattgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

6.06

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031247)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8213570.1_g000001 Rmu_sc0003154.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	186
AciI	CCGC	2 cut(s)	113, 186
AclWI	GGATC	3 cut(s)	2, 15, 80
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	30, 59, 94, 142
AlwI	GGATC	3 cut(s)	2, 15, 80
AoxI	GGCC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	7
BccI	CCATC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	9
BmsI	GCATC	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	46, 128
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	7, 85
BspACI	CCGC	2 cut(s)	113, 186
BspANI	GGCC	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	2, 15, 80
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	45
BssMI	GATC	2 cut(s)	7, 85
Bst4CI	ACNGT	3 cut(s)	40, 98, 177
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	71, 197
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	10, 88
BstMBI	GATC	2 cut(s)	7, 85
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNSI	RCATGY	2 cut(s)	121, 205
BstUI	CGCG	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	203
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	45
CviAII	CATG	2 cut(s)	118, 202
CviJI	RGCY	2 cut(s)	49, 195
CviKI_1	RGCY	2 cut(s)	49, 195
DdeI	CTNAG	2 cut(s)	71, 197
DpnI	GATC	2 cut(s)	9, 87
DpnII	GATC	2 cut(s)	7, 85
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
FaeI	CATG	2 cut(s)	121, 205
FaiI	YATR	2 cut(s)	119, 203
FatI	CATG	2 cut(s)	117, 201
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	2 cut(s)	46, 128
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	121, 205
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	2 cut(s)	46, 128
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	30
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	33, 136
HpyCH4III	ACNGT	3 cut(s)	40, 98, 177
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	2 cut(s)	71, 197
Hsp92II	CATG	2 cut(s)	121, 205
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	7, 85
LpnPI	CCDG	4 cut(s)	24, 59, 63, 141
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	237
MalI	GATC	2 cut(s)	9, 87
MboI	GATC	2 cut(s)	7, 85
MboII	GAAGA	2 cut(s)	18, 59
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	1 cut(s)	249
MspI	CCGG	2 cut(s)	46, 128
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	192
NdeII	GATC	2 cut(s)	7, 85
NlaIII	CATG	2 cut(s)	121, 205
NlaIV	GGNNCC	1 cut(s)	9
NspI	RCATGY	2 cut(s)	121, 205
PaeI	GCATGC	1 cut(s)	205
PciI	ACATGT	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	33
PscI	ACATGT	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	7
Sau3AI	GATC	2 cut(s)	7, 85
SetI	ASST	1 cut(s)	170
SfaNI	GCATC	1 cut(s)	73
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	2 cut(s)	113, 186
SspMI	CTAG	1 cut(s)	237
TaaI	ACNGT	3 cut(s)	40, 98, 177
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	2 cut(s)	121, 205
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.