Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8233439.1

Orthogroup ID

OG0025543

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 685

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8233439.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 487 bp

atgcgctggttttatactggtgacattggaatgtttcatcctgatggatgccttgaaattatagataggaagaaggatatcgttaaactccagcatggagaatacatctcccttggaaaggttgaggcagcattgataaacagtaattatgtggacaatatcatggtatttgcagaccccttccacaactactgcgtagctgtagttgtccctgtgcgtcaagccctggagcagtgggctcagggagctggaatcaagtacaatgatttttctgagctgtgtggaaaagctgaagcagttagtgaggtccagcaatccctctccaaggtagcaaaagaagcaaaattggacaagtttgaacttcctggaaagatttatttggcgcctgatccatggacacctgaatccggattggttactgctgctctcaagatcaagagggaacagatcaagtccaagttcaaaagtgagattgagaagttgtatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

162

Amino Acids

18.3

Weight (kDa)

6.31

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025543)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8233439.1_g000001 Rmu_sc0002712.1_g000016 Rmu_sc0003417.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccIII	TCCGGA	1 cut(s)	407
AclWI	GGATC	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	383
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	118, 325, 407
AgsI	TTSAA	3 cut(s)	56, 359, 463
AjnI	CCWGG	2 cut(s)	225, 364
AluBI	AGCT	4 cut(s)	200, 248, 277, 290
AluI	AGCT	4 cut(s)	200, 248, 277, 290
AlwI	GGATC	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	407
ApeKI	GCWGC	2 cut(s)	128, 422
AspLEI	GCGC	2 cut(s)	6, 385
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	140, 409
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	227, 366
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	386
BisI	GCNGC	2 cut(s)	129, 423
BlsI	GCNGC	2 cut(s)	130, 424
Bme1390I	CCNGG	2 cut(s)	227, 366
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	227, 366
BmsI	GCATC	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	74, 248
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	383
BsaJI	CCNNGG	4 cut(s)	112, 225, 324, 392
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 325, 407
Bse1I	ACTGG	1 cut(s)	22
BseAI	TCCGGA	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	227, 366
BseDI	CCNNGG	4 cut(s)	112, 225, 324, 392
BseGI	GGATG	2 cut(s)	37, 53
BseLI	CCNNNNNNNGG	3 cut(s)	118, 325, 407
BseMII	CTCAG	2 cut(s)	254, 264
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	140, 409
BshNI	GGYRCC	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	118, 325, 407
BsmFI	GGGAC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp13I	TCCGGA	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	388, 432, 447
Bsp19I	CCATGG	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	253, 265
BspEI	TCCGGA	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	4 cut(s)	112, 225, 324, 392
BssMI	GATC	3 cut(s)	388, 432, 447
BssNI	GRCGYC	1 cut(s)	383
BssT1I	CCWWGG	3 cut(s)	112, 324, 392
Bst2UI	CCWGG	2 cut(s)	227, 366
Bst4CI	ACNGT	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	383
BstDEI	CTNAG	2 cut(s)	240, 273
BstDSI	CCRYGG	1 cut(s)	392
BstENI	CCTNNNNNAGG	2 cut(s)	116, 323
BstF5I	GGATG	2 cut(s)	37, 53
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	2 cut(s)	6, 385
BstKTI	GATC	3 cut(s)	391, 435, 450
BstMBI	GATC	3 cut(s)	388, 432, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 338
BstNI	CCWGG	2 cut(s)	227, 366
BstSCI	CCNGG	2 cut(s)	225, 364
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	140, 409
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	37, 53
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	239
CfoI	GCGC	2 cut(s)	6, 385
Cfr13I	GGNCC	1 cut(s)	307
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	95, 163, 393
CviJI	RGCY	6 cut(s)	200, 224, 239, 248, 277, 290
CviKI_1	RGCY	6 cut(s)	200, 224, 239, 248, 277, 290
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	240, 273
DinI	GGCGCC	1 cut(s)	384
DpnI	GATC	3 cut(s)	390, 434, 449
DpnII	GATC	3 cut(s)	388, 432, 447
Eco130I	CCWWGG	3 cut(s)	112, 324, 392
Eco24I	GRGCYC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	312
EcoNI	CCTNNNNNAGG	2 cut(s)	116, 323
EcoRII	CCWGG	2 cut(s)	225, 364
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	3 cut(s)	112, 324, 392
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	384
EheI	GGCGCC	1 cut(s)	384
ErhI	CCWWGG	3 cut(s)	112, 324, 392
FaeI	CATG	3 cut(s)	98, 166, 396
FaiI	YATR	7 cut(s)	15, 62, 96, 150, 164, 394, 486
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	3 cut(s)	94, 162, 392
Fnu4HI	GCNGC	2 cut(s)	129, 423
FokI	GGATG	2 cut(s)	24, 60
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	2 cut(s)	129, 423
GlaI	GCGC	2 cut(s)	5, 384
GluI	GCNGC	2 cut(s)	129, 423
GsuI	CTGGAG	2 cut(s)	74, 248
HaeII	RGCGCY	1 cut(s)	386
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	6, 385
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	3 cut(s)	98, 166, 396
Hin6I	GCGC	2 cut(s)	4, 383
HinP1I	GCGC	2 cut(s)	4, 383
HinfI	GANTC	2 cut(s)	252, 404
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	4 cut(s)	41, 408, 430, 436
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	67, 190
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 338
HpyF3I	CTNAG	2 cut(s)	240, 273
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	3 cut(s)	98, 166, 396
HspAI	GCGC	2 cut(s)	4, 383
KasI	GGCGCC	1 cut(s)	382
Kpn2I	TCCGGA	1 cut(s)	407
Kzo9I	GATC	3 cut(s)	388, 432, 447
LmnI	GCTCC	2 cut(s)	229, 245
Lsp1109I	GCAGC	2 cut(s)	140, 409
LweI	GCATC	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	20, 415
MalI	GATC	3 cut(s)	390, 434, 449
MboI	GATC	3 cut(s)	388, 432, 447
MboII	GAAGA	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	3 cut(s)	57, 145, 344
Mly113I	GGCGCC	1 cut(s)	383
MnlI	CCTC	4 cut(s)	118, 298, 329, 432
MroI	TCCGGA	1 cut(s)	407
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	29, 42
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	227, 366
MvaI	CCWGG	2 cut(s)	227, 366
MwoI	GCNNNNNNNGC	2 cut(s)	245, 338
NarI	GGCGCC	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	3 cut(s)	388, 432, 447
NlaIII	CATG	3 cut(s)	98, 166, 396
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	252, 404
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	130, 424
PluTI	GGCGCC	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	225, 364
PspGI	CCWGG	2 cut(s)	225, 364
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	307
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	29, 42
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	129, 423
Sau3AI	GATC	3 cut(s)	388, 432, 447
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	227, 366
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	8 cut(s)	123, 202, 250, 279, 292, 309, 330, 403
SfaNI	GCATC	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	384
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	29, 42
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	3 cut(s)	57, 145, 344
SspDI	GGCGCC	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	225, 364
StyI	CCWWGG	3 cut(s)	112, 324, 392
TaaI	ACNGT	1 cut(s)	143
TasI	AATT	3 cut(s)	57, 145, 344
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	252, 404
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	128, 422
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	307
XagI	CCTNNNNNAGG	2 cut(s)	116, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.