Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8234095.1

Orthogroup ID

OG0031239

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 761

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8234095.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 761 bp

catcttcgtctgctgttcccaaaacacaaccaaagcttccattgaaacaaatccccggtgactatggcacacccttctttggtgccatcaaggatcgctacgattttttttacaaccaaggtcgcgaccagttctttaaagctcggatccaaaagtacgactccactgtgttccgtacaaacatgcctcctggtccattcattgcttcaaacccgaaggtcgtgactgtcctggatgccataagctttccgattctcttcgacaactccaaagtcgaaaaacgtgacatcttcgatggcacttacatgccatctacagacttcaccggtggctatcgcatttgctcatttcttgacccatccgaagctaaacacacttctctcaaaaacttcttcttgtctctactctcagctaaccacaagaatgttataccacttttccatacccacttcaccgacctatttgtcaaagccgaggctcagttgttaaaagatggaaaatcagactttaacacactgaatgataaaacttccttcgacttcatttttgagctgttttttgggaaaaacccatcggacacaactctgggttccaaaggatcaaccttggttaccctttggctcttaccccaactttctcctcagctcacactaggattacccaagttgttcaatgttttcgaagatttcttgcttcacacgtttcccttccctgccctttttgttaaaccggcttataacaaggtatacaaggccttttac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

253

Amino Acids

28.76

Weight (kDa)

9.1

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031239)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8234095.1_g000001 Rmu_sc0003025.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AasI	GACNNNNNNGTC	1 cut(s)	463
AccB1I	GGYRCC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	746
AccII	CGCG	1 cut(s)	125
AclWI	GGATC	4 cut(s)	101, 141, 154, 606
AfaI	GTAC	2 cut(s)	157, 177
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	698
AgeI	ACCGGT	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	45, 209, 672
AjnI	CCWGG	2 cut(s)	189, 230
AluBI	AGCT	7 cut(s)	36, 142, 245, 367, 412, 552, 645
AluI	AGCT	7 cut(s)	36, 142, 245, 367, 412, 552, 645
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	4 cut(s)	101, 141, 154, 606
AoxI	GGCC	1 cut(s)	752
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AsiGI	ACCGGT	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	70, 315, 444
AsuII	TTCGAA	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	641
BccI	CCATC	6 cut(s)	94, 289, 318, 366, 487, 579
BciT130I	CCWGG	2 cut(s)	191, 232
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	652
BfmI	CTRYAG	1 cut(s)	314
Bme1390I	CCNGG	3 cut(s)	56, 191, 232
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	3 cut(s)	84, 148, 591
BmrFI	CCNGG	3 cut(s)	56, 191, 232
BmsI	GCATC	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	4 cut(s)	54, 117, 473, 605
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	2 cut(s)	325, 729
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	191, 232
BseDI	CCNNGG	4 cut(s)	54, 117, 473, 605
BseGI	GGATG	2 cut(s)	240, 358
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	3 cut(s)	422, 493, 655
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	754
BshNI	GGYRCC	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	325
BsiSI	CCGG	3 cut(s)	56, 326, 730
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	754
Bsp119I	TTCGAA	1 cut(s)	680
Bsp143I	GATC	3 cut(s)	93, 146, 598
Bsp68I	TCGCGA	1 cut(s)	125
BspANI	GGCC	1 cut(s)	754
BspCNI	CTCAG	3 cut(s)	421, 492, 654
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	84, 148, 591
BspPI	GGATC	4 cut(s)	101, 141, 154, 606
BspT104I	TTCGAA	1 cut(s)	680
BspT107I	GGYRCC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	200
BsrFI	RCCGGY	2 cut(s)	325, 729
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	2 cut(s)	325, 729
BssECI	CCNNGG	4 cut(s)	54, 117, 473, 605
BssMI	GATC	3 cut(s)	93, 146, 598
BssNAI	GTATAC	1 cut(s)	747
BssT1I	CCWWGG	2 cut(s)	117, 605
Bst1107I	GTATAC	1 cut(s)	747
Bst2UI	CCWGG	2 cut(s)	191, 232
Bst4CI	ACNGT	2 cut(s)	168, 228
Bst6I	CTCTTC	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	680
BstDEI	CTNAG	3 cut(s)	408, 479, 641
BstEII	GGTNACC	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	240, 358
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	3 cut(s)	96, 149, 601
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	93, 146, 598
BstNI	CCWGG	2 cut(s)	191, 232
BstNSI	RCATGY	2 cut(s)	186, 309
BstPI	GGTNACC	1 cut(s)	609
BstSCI	CCNGG	3 cut(s)	54, 189, 230
BstSFI	CTRYAG	1 cut(s)	314
BstUI	CGCG	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BstZ17I	GTATAC	1 cut(s)	747
BsuRI	GGCC	1 cut(s)	754
BtsCI	GGATG	2 cut(s)	240, 358
BtsIMutI	CAGTG	2 cut(s)	164, 514
BtuMI	TCGCGA	1 cut(s)	125
Cfr10I	RCCGGY	2 cut(s)	325, 729
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	156, 176
CspAI	ACCGGT	1 cut(s)	325
CviAII	CATG	2 cut(s)	183, 306
CviQI	GTAC	2 cut(s)	156, 176
DdeI	CTNAG	3 cut(s)	408, 479, 641
DpnI	GATC	3 cut(s)	95, 148, 600
DpnII	GATC	3 cut(s)	93, 146, 598
DraI	TTTAAA	1 cut(s)	138
DrdI	GACNNNNNNGTC	1 cut(s)	463
DseDI	GACNNNNNNGTC	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	117, 605
Eco147I	AGGCCT	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	609
EcoO65I	GGTNACC	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	189, 230
EcoT14I	CCWWGG	2 cut(s)	117, 605
ErhI	CCWWGG	2 cut(s)	117, 605
FaeI	CATG	2 cut(s)	186, 309
FaiI	YATR	8 cut(s)	65, 184, 241, 307, 430, 443, 737, 747
FatI	CATG	2 cut(s)	182, 305
FblI	GTMKAC	1 cut(s)	746
FokI	GGATG	2 cut(s)	247, 345
FspBI	CTAG	1 cut(s)	652
HaeIII	GGCC	1 cut(s)	754
HapII	CCGG	3 cut(s)	56, 326, 730
Hin1II	CATG	2 cut(s)	186, 309
HindIII	AAGCTT	2 cut(s)	34, 243
HinfI	GANTC	2 cut(s)	160, 252
HpaII	CCGG	3 cut(s)	56, 326, 730
HphI	GGTGA	3 cut(s)	70, 315, 444
Hpy166II	GTNNAC	1 cut(s)	747
Hpy188I	TCNGA	5 cut(s)	146, 251, 363, 504, 576
Hpy188III	TCNNGA	3 cut(s)	124, 222, 352
Hpy8I	GTNNAC	1 cut(s)	747
HpyAV	CCTTC	4 cut(s)	84, 210, 543, 717
HpyCH4III	ACNGT	2 cut(s)	168, 228
HpyCH4IV	ACGT	2 cut(s)	282, 700
HpyF3I	CTNAG	3 cut(s)	408, 479, 641
HpySE526I	ACGT	2 cut(s)	282, 700
Hsp92II	CATG	2 cut(s)	186, 309
Kzo9I	GATC	3 cut(s)	93, 146, 598
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	652
MaeII	ACGT	2 cut(s)	282, 700
MaeIII	GTNAC	4 cut(s)	58, 222, 283, 609
MalI	GATC	3 cut(s)	95, 148, 600
MboI	GATC	3 cut(s)	93, 146, 598
MboII	GAAGA	4 cut(s)	249, 282, 384, 694
MflI	RGATCY	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	3 cut(s)	197, 468, 650
MseI	TTAA	4 cut(s)	137, 487, 509, 725
MslI	CAYNNNNRTG	2 cut(s)	304, 422
MspI	CCGG	3 cut(s)	56, 326, 730
MspR9I	CCNGG	3 cut(s)	56, 191, 232
MvaI	CCWGG	2 cut(s)	191, 232
MvnI	CGCG	1 cut(s)	125
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	3 cut(s)	93, 146, 598
NlaIII	CATG	2 cut(s)	186, 309
NlaIV	GGNNCC	3 cut(s)	84, 148, 591
NmeAIII	GCCGAG	1 cut(s)	498
NmuCI	GTSAC	3 cut(s)	58, 222, 283
NruI	TCGCGA	1 cut(s)	125
NspI	RCATGY	2 cut(s)	186, 309
NspV	TTCGAA	1 cut(s)	680
PceI	AGGCCT	1 cut(s)	754
PfeI	GAWTC	1 cut(s)	252
PfoI	TCCNGGA	1 cut(s)	230
PinAI	ACCGGT	1 cut(s)	325
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PsiI	TTATAA	1 cut(s)	737
Psp6I	CCWGG	2 cut(s)	189, 230
PspEI	GGTNACC	1 cut(s)	609
PspGI	CCWGG	2 cut(s)	189, 230
PspN4I	GGNNCC	3 cut(s)	84, 148, 591
PspPI	GGNCC	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	146
RruI	TCGCGA	1 cut(s)	125
RsaI	GTAC	2 cut(s)	157, 177
RsaNI	GTAC	2 cut(s)	156, 176
RseI	CAYNNNNRTG	2 cut(s)	304, 422
SaqAI	TTAA	4 cut(s)	137, 487, 509, 725
Sau3AI	GATC	3 cut(s)	93, 146, 598
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	3 cut(s)	56, 191, 232
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	680
SgrAI	CRCCGGYG	1 cut(s)	325
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	2 cut(s)	304, 422
SseBI	AGGCCT	1 cut(s)	754
SspMI	CTAG	1 cut(s)	652
StuI	AGGCCT	1 cut(s)	754
StyD4I	CCNGG	3 cut(s)	54, 189, 230
StyI	CCWWGG	2 cut(s)	117, 605
TaaI	ACNGT	2 cut(s)	168, 228
TaiI	ACGT	2 cut(s)	285, 703
TaqI	TCGA	5 cut(s)	260, 275, 293, 536, 680
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	4 cut(s)	137, 487, 509, 725
Tru9I	TTAA	4 cut(s)	137, 487, 509, 725
TscAI	CASTG	2 cut(s)	171, 521
TseFI	GTSAC	3 cut(s)	58, 222, 283
Tsp45I	GTSAC	3 cut(s)	58, 222, 283
TspDTI	ATGAA	2 cut(s)	189, 531
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	171, 521
VpaK11BI	GGWCC	1 cut(s)	193
XceI	RCATGY	2 cut(s)	186, 309
XmiI	GTMKAC	1 cut(s)	746
XspI	CTAG	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.