Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom02g25930 |
| rosa_multiflora | Rmu_co8254497.1_g000001 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 170, 395 |
| AcuI | CTGAAG | 1 cut(s) | 275 |
| AdeI | CACNNNGTG | 1 cut(s) | 52 |
| AfaI | GTAC | 1 cut(s) | 349 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 118 |
| AluBI | AGCT | 2 cut(s) | 304, 377 |
| AluI | AGCT | 2 cut(s) | 304, 377 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 216 |
| AspS9I | GGNCC | 1 cut(s) | 418 |
| AvaII | GGWCC | 1 cut(s) | 418 |
| BbsI | GAAGAC | 1 cut(s) | 209 |
| BccI | CCATC | 1 cut(s) | 260 |
| BglII | AGATCT | 1 cut(s) | 250 |
| Bme18I | GGWCC | 1 cut(s) | 418 |
| BmgT120I | GGNCC | 1 cut(s) | 418 |
| BmiI | GGNNCC | 1 cut(s) | 419 |
| BmsI | GCATC | 1 cut(s) | 301 |
| BpiI | GAAGAC | 1 cut(s) | 209 |
| BpmI | CTGGAG | 1 cut(s) | 326 |
| Bpu10I | CCTNAGC | 1 cut(s) | 378 |
| BpuEI | CTTGAG | 1 cut(s) | 23 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 118 |
| Bse1I | ACTGG | 1 cut(s) | 405 |
| Bse3DI | GCAATG | 1 cut(s) | 396 |
| BseGI | GGATG | 1 cut(s) | 316 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BseMI | GCAATG | 1 cut(s) | 396 |
| BseNI | ACTGG | 1 cut(s) | 405 |
| BslFI | GGGAC | 2 cut(s) | 411, 431 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BsmFI | GGGAC | 2 cut(s) | 411, 431 |
| Bsp143I | GATC | 1 cut(s) | 250 |
| BspACI | CCGC | 2 cut(s) | 170, 395 |
| BspLI | GGNNCC | 1 cut(s) | 419 |
| BsrDI | GCAATG | 1 cut(s) | 396 |
| BsrI | ACTGG | 1 cut(s) | 405 |
| BssMI | GATC | 1 cut(s) | 250 |
| BstDEI | CTNAG | 2 cut(s) | 319, 378 |
| BstF5I | GGATG | 1 cut(s) | 316 |
| BstKTI | GATC | 1 cut(s) | 253 |
| BstMBI | GATC | 1 cut(s) | 250 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 320, 401 |
| BstV2I | GAAGAC | 1 cut(s) | 209 |
| BstX2I | RGATCY | 1 cut(s) | 250 |
| BstYI | RGATCY | 1 cut(s) | 250 |
| BtsCI | GGATG | 1 cut(s) | 316 |
| Cfr13I | GGNCC | 1 cut(s) | 418 |
| Csp6I | GTAC | 1 cut(s) | 348 |
| CviJI | RGCY | 6 cut(s) | 44, 286, 304, 377, 383, 404 |
| CviKI_1 | RGCY | 6 cut(s) | 44, 286, 304, 377, 383, 404 |
| CviQI | GTAC | 1 cut(s) | 348 |
| DdeI | CTNAG | 2 cut(s) | 319, 378 |
| DpnI | GATC | 1 cut(s) | 252 |
| DpnII | GATC | 1 cut(s) | 250 |
| DraIII | CACNNNGTG | 1 cut(s) | 52 |
| Eco47I | GGWCC | 1 cut(s) | 418 |
| Eco57I | CTGAAG | 1 cut(s) | 275 |
| FaiI | YATR | 2 cut(s) | 291, 426 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 335, 367 |
| FaqI | GGGAC | 2 cut(s) | 411, 431 |
| FauI | CCCGC | 1 cut(s) | 388 |
| FokI | GGATG | 1 cut(s) | 323 |
| GsuI | CTGGAG | 1 cut(s) | 326 |
| HinfI | GANTC | 3 cut(s) | 107, 133, 371 |
| Hpy166II | GTNNAC | 2 cut(s) | 164, 348 |
| Hpy188I | TCNGA | 2 cut(s) | 255, 340 |
| Hpy188III | TCNNGA | 1 cut(s) | 416 |
| Hpy8I | GTNNAC | 2 cut(s) | 164, 348 |
| HpyAV | CCTTC | 1 cut(s) | 324 |
| HpyCH4IV | ACGT | 1 cut(s) | 51 |
| HpyCH4V | TGCA | 2 cut(s) | 194, 389 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 320, 401 |
| HpyF3I | CTNAG | 2 cut(s) | 319, 378 |
| HpySE526I | ACGT | 1 cut(s) | 51 |
| Kzo9I | GATC | 1 cut(s) | 250 |
| LpnPI | CCDG | 5 cut(s) | 111, 186, 290, 309, 386 |
| LweI | GCATC | 1 cut(s) | 301 |
| MaeII | ACGT | 1 cut(s) | 51 |
| MalI | GATC | 1 cut(s) | 252 |
| MboI | GATC | 1 cut(s) | 250 |
| MboII | GAAGA | 4 cut(s) | 31, 67, 209, 268 |
| MflI | RGATCY | 1 cut(s) | 250 |
| MluCI | AATT | 1 cut(s) | 58 |
| MnlI | CCTC | 5 cut(s) | 47, 276, 301, 320, 358 |
| MroXI | GAANNNNTTC | 1 cut(s) | 216 |
| MseI | TTAA | 3 cut(s) | 182, 237, 359 |
| MslI | CAYNNNNRTG | 1 cut(s) | 426 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 320, 401 |
| NdeII | GATC | 1 cut(s) | 250 |
| NlaIV | GGNNCC | 1 cut(s) | 419 |
| PdmI | GAANNNNTTC | 1 cut(s) | 216 |
| PfeI | GAWTC | 3 cut(s) | 107, 133, 371 |
| PspN4I | GGNNCC | 1 cut(s) | 419 |
| PspPI | GGNCC | 1 cut(s) | 418 |
| PsuI | RGATCY | 1 cut(s) | 250 |
| RsaI | GTAC | 1 cut(s) | 349 |
| RsaNI | GTAC | 1 cut(s) | 348 |
| RseI | CAYNNNNRTG | 1 cut(s) | 426 |
| SaqAI | TTAA | 3 cut(s) | 182, 237, 359 |
| Sau3AI | GATC | 1 cut(s) | 250 |
| Sau96I | GGNCC | 1 cut(s) | 418 |
| SetI | ASST | 5 cut(s) | 39, 54, 306, 353, 379 |
| SfaNI | GCATC | 1 cut(s) | 301 |
| SinI | GGWCC | 1 cut(s) | 418 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 426 |
| SmlI | CTYRAG | 1 cut(s) | 38 |
| SmoI | CTYRAG | 1 cut(s) | 38 |
| Sse9I | AATT | 1 cut(s) | 58 |
| SsiI | CCGC | 2 cut(s) | 170, 395 |
| TaiI | ACGT | 1 cut(s) | 54 |
| TasI | AATT | 1 cut(s) | 58 |
| TfiI | GAWTC | 3 cut(s) | 107, 133, 371 |
| Tru1I | TTAA | 3 cut(s) | 182, 237, 359 |
| Tru9I | TTAA | 3 cut(s) | 182, 237, 359 |
| TspDTI | ATGAA | 2 cut(s) | 17, 278 |
| TspGWI | ACGGA | 1 cut(s) | 293 |
| VpaK11BI | GGWCC | 1 cut(s) | 418 |
| XmnI | GAANNNNTTC | 1 cut(s) | 216 |