Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8258207.1

Orthogroup ID

OG0031285

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 450

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8258207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 374 bp

accatcatccatggaaacctctctcagaacagagaccaacccaaactccccaaacaatcccaaccacccaacccccgaaacccatgaccatatctgactctaccgacccatctctgaccacctttgtccaggttaacacatccttcttcaagcaagttgtccaaatgctgaccggatccttagaaacagccaacaagcttgcatgttcgaaagataacgccaggcacaacatcccattcatcaagcccacgttgaagcagcaccagcagcgggactctaggttcaagctgtacgagcactacaacaacgcctttaagaatctctggctaaaccctataatcccaatctcggtgttcaattcccacatgccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0010185 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043433 GO:0044092 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051245 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

123

Amino Acids

14.19

Weight (kDa)

9.78

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031285)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8258207.1_g000001 Rmu_sc0003863.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	2 cut(s)	170, 183
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	2 cut(s)	270, 348
AgsI	TTSAA	4 cut(s)	150, 255, 285, 357
AjnI	CCWGG	2 cut(s)	128, 220
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	2 cut(s)	198, 288
AluI	AGCT	2 cut(s)	198, 288
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	170, 183
ApeKI	GCWGC	2 cut(s)	258, 267
AsuII	TTCGAA	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	270, 279
BccI	CCATC	2 cut(s)	11, 117
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	2 cut(s)	130, 222
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	278
BisI	GCNGC	2 cut(s)	259, 268
BlsI	GCNGC	2 cut(s)	260, 269
Bme1390I	CCNGG	2 cut(s)	130, 222
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	130, 222
Bpu14I	TTCGAA	1 cut(s)	208
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 348
BseBI	CCWGG	2 cut(s)	130, 222
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	3 cut(s)	6, 139, 230
BseLI	CCNNNNNNNGG	2 cut(s)	270, 348
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	270, 279
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	270, 348
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	175
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	170, 183
BspT104I	TTCGAA	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	2 cut(s)	130, 222
BstBI	TTCGAA	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	24, 180
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	6, 139, 230
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	264, 267, 294
BstNI	CCWGG	2 cut(s)	130, 222
BstNSI	RCATGY	2 cut(s)	206, 369
BstSCI	CCNGG	2 cut(s)	128, 220
BstV1I	GCAGC	2 cut(s)	270, 279
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	6, 139, 230
Cac8I	GCNNGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	4 cut(s)	11, 84, 203, 366
CviJI	RGCY	5 cut(s)	190, 198, 246, 288, 327
CviKI_1	RGCY	5 cut(s)	190, 198, 246, 288, 327
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	2 cut(s)	24, 180
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	128, 220
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	4 cut(s)	14, 87, 206, 369
FaiI	YATR	6 cut(s)	12, 85, 91, 204, 337, 367
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	4 cut(s)	10, 83, 202, 365
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	259, 268
FokI	GGATG	2 cut(s)	126, 217
Fsp4HI	GCNGC	2 cut(s)	259, 268
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	2 cut(s)	259, 268
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	4 cut(s)	14, 87, 206, 369
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	3 cut(s)	97, 274, 318
HpaI	GTTAAC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	27, 96, 116
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	264, 267, 294
HpyF3I	CTNAG	2 cut(s)	24, 180
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	4 cut(s)	14, 87, 206, 369
KspAI	GTTAAC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	7 cut(s)	115, 142, 186, 207, 234, 277, 309
Lsp1109I	GCAGC	2 cut(s)	270, 279
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	250
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	91, 268
MnlI	CCTC	1 cut(s)	29
MseI	TTAA	2 cut(s)	134, 314
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	130, 222
MvaI	CCWGG	2 cut(s)	130, 222
MwoI	GCNNNNNNNGC	3 cut(s)	264, 267, 294
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	4 cut(s)	14, 87, 206, 369
NlaIV	GGNNCC	1 cut(s)	177
NspI	RCATGY	2 cut(s)	206, 369
NspV	TTCGAA	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	2 cut(s)	260, 269
PleI	GAGTC	2 cut(s)	91, 268
PpsI	GAGTC	2 cut(s)	91, 268
Psp6I	CCWGG	2 cut(s)	128, 220
PspGI	CCWGG	2 cut(s)	128, 220
PspN4I	GGNNCC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	134, 314
SatI	GCNGC	2 cut(s)	259, 268
Sau3AI	GATC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	91, 268
ScrFI	CCNGG	2 cut(s)	130, 222
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	7 cut(s)	21, 124, 134, 200, 253, 283, 290
SfuI	TTCGAA	1 cut(s)	208
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	128, 220
StyI	CCWWGG	1 cut(s)	10
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	1 cut(s)	208
TasI	AATT	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	134, 314
Tru9I	TTAA	2 cut(s)	134, 314
TseI	GCWGC	2 cut(s)	258, 267
TspDTI	ATGAA	1 cut(s)	228
XceI	RCATGY	2 cut(s)	206, 369
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.