Rmu_co8289637.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8289637.1
OG0025083
Physical Location & Seq
Forward (+)
1 .. 561
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8289637.1_g000001.1.cds

Sequence Viewer

Length: 463 bp
ccctgtcattcttgtatcctccccatctgcagtcgaggaatgcttcacaaagcatgacgttgcctttgcaaaccgtccaaagctgcttgccggaaaataccttggttataactataccacagttacctgggcttcttttggctctcattggcgcaacttgagacgcatttcttcccttgaattattgtcatccaaccgccttcagatgcttcagggcatacgtgcagatgaagtcaggtcactcatttgccggctttttagagggtctaatggtggtgagtttcagagtttagagatgaagtcaacattttttcagctaactctcaatgttatgatgaggatggtagctgggaagagatactatggggaagatgtagcagatttggaggaagctaaaaggtttcaacaaataataaaatatcccagtattgatggttacgtttttcccttaaagaaaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

153

Amino Acids

17.5

Weight (kDa)

9.58

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025083)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0309051
rosa_multiflora Rmu_co8289637.1_g000001
rosa_samantha Rh6AG482000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 109
AciI CCGC 1 cut(s) 197
AcuI CTGAAG 2 cut(s) 186, 195
AgsI TTSAA 2 cut(s) 180, 405
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 83, 317, 348, 393
AluI AGCT 4 cut(s) 83, 317, 348, 393
Alw26I GTCTC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspLEI GCGC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 288
BbvI GCAGC 1 cut(s) 70
BccI CCATC 3 cut(s) 32, 335, 426
BciT130I CCWGG 1 cut(s) 128
BciVI GTATCC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 28
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 101, 127
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 101, 127
BseGI GGATG 2 cut(s) 189, 346
BseNI ACTGG 1 cut(s) 424
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 244
BsiSI CCGG 2 cut(s) 91, 251
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 45
BspACI CCGC 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 101, 127
BssT1I CCWWGG 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 75, 122
Bst6I CTCTTC 1 cut(s) 348
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 88, 252
BstF5I GGATG 2 cut(s) 189, 346
BstHHI GCGC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 70
BsuI GTATCC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 189, 346
Cac8I GCNNGC 2 cut(s) 88, 252
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 250
CseI GACGC 1 cut(s) 172
CviAII CATG 1 cut(s) 54
CviJI RGCY 7 cut(s) 83, 132, 142, 254, 317, 348, 393
CviKI_1 RGCY 7 cut(s) 83, 132, 142, 254, 317, 348, 393
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 186, 195
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 1 cut(s) 57
FaiI YATR 6 cut(s) 55, 109, 115, 219, 333, 364
FatI CATG 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 176, 353
Fsp4HI GCNGC 1 cut(s) 84
GlaI GCGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 84
GsaI CCCAGC 1 cut(s) 352
HapII CCGG 2 cut(s) 91, 251
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HpaII CCGG 2 cut(s) 91, 251
HphI GGTGA 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 205, 286
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 2 cut(s) 75, 122
HpyCH4IV ACGT 3 cut(s) 58, 221, 439
HpyCH4V TGCA 3 cut(s) 30, 69, 225
HpySE526I ACGT 3 cut(s) 58, 221, 439
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 1 cut(s) 152
KroI GCCGGC 1 cut(s) 250
KroNI GCCGGC 1 cut(s) 252
LpnPI CCDG 9 cut(s) 16, 104, 113, 140, 198, 221, 264, 334, 437
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 196
MaeII ACGT 3 cut(s) 58, 221, 439
MaeIII GTNAC 3 cut(s) 122, 238, 435
MboII GAAGA 3 cut(s) 163, 365, 381
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 5 cut(s) 29, 29, 255, 331, 380
MroNI GCCGGC 1 cut(s) 250
MseI TTAA 1 cut(s) 450
MspI CCGG 2 cut(s) 91, 251
MspR9I CCNGG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 252
NgoMIV GCCGGC 1 cut(s) 250
NlaIII CATG 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 238
PctI GAATGC 1 cut(s) 45
PdiI GCCGGC 1 cut(s) 252
PkrI GCNGC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 222
PsiI TTATAA 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 348
PspGI CCWGG 1 cut(s) 126
PstI CTGCAG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 128
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 2 cut(s) 75, 122
TaiI ACGT 3 cut(s) 61, 224, 442
TaqI TCGA 1 cut(s) 34
TasI AATT 1 cut(s) 180
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 244, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.