Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8317049.1

Orthogroup ID

OG0031098

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 632

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8317049.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

cttcttgactctgaaacaagttattccttctcttatcaactcttgctcattttcatttgtcagcgagatgctgccactgctccaacggttggggatcgagtaccatatgtcattatcaaagctgcaaaaggtgccaaggcttatgagaggtcagaggaccccatctatgtgctcgagaataacattcctatagaccctcaatattatcttgaaaaccaaatcagcaaggtaaattggtttaatagtgttttcaatttgcaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006284 GO:0006287 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008408 GO:0009058 GO:0009059 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0034645 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045004 GO:0045005 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 zf-C4pol

Protein Analysis

88

Amino Acids

10.08

Weight (kDa)

4.65

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031098)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8317049.1_g000001 Rmu_sc0000805.1_g000055

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	89
AclWI	GGATC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	212, 253
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	71, 122
AspS9I	GGNCC	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	58, 109
BccI	CCATC	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	72, 123
BlsI	GCNGC	2 cut(s)	73, 124
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	133, 159
BmsI	GCATC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	58, 109
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	133, 159
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 131
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	58, 109
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	101
CviJI	RGCY	2 cut(s)	122, 140
CviKI_1	RGCY	2 cut(s)	122, 140
CviQI	GTAC	1 cut(s)	101
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaiI	YATR	5 cut(s)	106, 108, 144, 168, 191
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	72, 123
Fsp4HI	GCNGC	2 cut(s)	72, 123
GluI	GCNGC	2 cut(s)	72, 123
HinfI	GANTC	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	13, 154
Hpy188III	TCNNGA	3 cut(s)	5, 175, 209
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	125, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 131
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	2 cut(s)	58, 109
LweI	GCATC	1 cut(s)	58
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	232, 253
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	3 cut(s)	141, 148, 207
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	77, 131
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	133, 159
PaeR7I	CTCGAG	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	73, 124
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	133, 159
PspPI	GGNCC	1 cut(s)	157
PspPPI	RGGWCCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	72, 123
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	2
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	4 cut(s)	124, 133, 152, 231
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	189
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	157
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	232, 253
SspI	AATATT	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	97, 174
TasI	AATT	2 cut(s)	232, 253
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	71, 122
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.