Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8344153.1

Orthogroup ID

OG0031340

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1018

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8344153.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

gaaaccctcctcaacggcgccggagacctctccgtgggcccgcaactcgtctcccacgtccaccgcctctgcagccacggcctcgagtctctcgtccgcgaccacttcctcggcgcgctcgagagaaccttcgagaaaaacggcgcctccaaattctggcggcatttcgaggcacacgacgacgtttcgatcggagagcaagtgttctacaacgccttggaggaaatctcactggaaaagcagtaccaggagaagtgcttgctgatgctggttcatgctttacagacttatggaggaagaagaagccgtgattccgatgacgtcagcccggagctctttgctaagtatcaattatcagtgtcctcggttcttatggccactcttcctcggcaatttccagagatactcaactggtattttaagggaaggttggaggaactgagtactataatggccggagacgagcctcgtggcgatgaggatgaagctgacagagatgatatggagttggatgagaaatgcagagtgtcatacaggagtggacaaatggagattgatgaatgttatccccaggggaggttctttgataataataaattggtcaacaacatagggcgggttgtacatgatttgaggagtcttggatttacatctatgactgaagatgcatatgcatctgctatctttttgtttcttaaggacaaagttcatgaccttgctggtgatgattatcggatttctgttttggagtctattaagaggtggatacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

257

Amino Acids

29.51

Weight (kDa)

4.97

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031340)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8344153.1_g000001 Rmu_sc0005291.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccB1I	GGYRCC	2 cut(s)	17, 143
AccB7I	CCANNNNNTGG	1 cut(s)	156
AccII	CGCG	2 cut(s)	99, 116
AciI	CCGC	5 cut(s)	41, 64, 97, 160, 616
AcoI	YGGCCR	2 cut(s)	375, 453
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	681
AcyI	GRCGYC	3 cut(s)	18, 144, 321
AfaI	GTAC	3 cut(s)	245, 445, 624
AfiI	CCNNNNNNNGG	3 cut(s)	34, 156, 576
AflII	CTTAAG	1 cut(s)	695
AjiI	CACGTC	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	246, 570
AluBI	AGCT	2 cut(s)	334, 488
AluI	AGCT	2 cut(s)	334, 488
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	4 cut(s)	18, 55, 93, 453
Ama87I	CYCGRG	2 cut(s)	83, 119
AoxI	GGCC	4 cut(s)	37, 79, 375, 453
ApaI	GGGCCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	4 cut(s)	20, 116, 118, 146
AspS9I	GGNCC	2 cut(s)	37, 38
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	734
AvaI	CYCGRG	2 cut(s)	83, 119
BaeGI	GKGCMC	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	2 cut(s)	17, 143
BanII	GRGCYC	2 cut(s)	41, 336
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	84
BceAI	ACGGC	4 cut(s)	31, 94, 157, 291
BciT130I	CCWGG	2 cut(s)	248, 572
BciVI	GTATCC	1 cut(s)	759
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	4 cut(s)	18, 55, 93, 453
BfmI	CTRYAG	1 cut(s)	70
BfoI	RGCGCY	2 cut(s)	21, 147
BfrI	CTTAAG	1 cut(s)	695
BfuI	GTATCC	1 cut(s)	759
BisI	GCNGC	2 cut(s)	73, 161
BlsI	GCNGC	2 cut(s)	74, 162
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	3 cut(s)	248, 329, 572
BmeT110I	CYCGRG	2 cut(s)	83, 119
BmgBI	CACGTC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	37, 38
BmiI	GGNNCC	3 cut(s)	19, 39, 145
BmrFI	CCNGG	3 cut(s)	248, 329, 572
BmsI	GCATC	3 cut(s)	255, 655, 683
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpuMI	CCSGG	1 cut(s)	329
BsaBI	GATNNNNATC	2 cut(s)	649, 729
BsaHI	GRCGYC	3 cut(s)	18, 144, 321
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	8 cut(s)	33, 76, 109, 216, 363, 386, 570, 571
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 186, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 156, 576
Bse1I	ACTGG	2 cut(s)	237, 416
Bse8I	GATNNNNATC	2 cut(s)	649, 729
BseBI	CCWGG	2 cut(s)	248, 572
BseDI	CCNNGG	8 cut(s)	33, 76, 109, 216, 363, 386, 570, 571
BseGI	GGATG	2 cut(s)	487, 517
BseJI	GATNNNNATC	2 cut(s)	649, 729
BseLI	CCNNNNNNNGG	3 cut(s)	34, 156, 576
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	237, 416
BsePI	GCGCGC	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	649
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	84
Bsh1236I	CGCG	2 cut(s)	99, 116
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	39, 81, 377, 455
BshNI	GGYRCC	2 cut(s)	17, 143
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	336
BsiHKCI	CYCGRG	2 cut(s)	83, 119
BsiSI	CCGG	3 cut(s)	21, 329, 456
BslI	CCNNNNNNNGG	3 cut(s)	34, 156, 576
BsmAI	GTCTC	4 cut(s)	18, 55, 93, 453
BsmBI	CGTCTC	2 cut(s)	55, 453
BsnI	GGCC	4 cut(s)	39, 81, 377, 455
Bso31I	GGTCTC	1 cut(s)	18
BsoBI	CYCGRG	2 cut(s)	83, 119
Bsp120I	GGGCCC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	41, 336
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	5 cut(s)	41, 64, 97, 160, 616
BspANI	GGCC	4 cut(s)	39, 81, 377, 455
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	2 cut(s)	99, 116
BspHI	TCATGA	1 cut(s)	709
BspLI	GGNNCC	3 cut(s)	19, 39, 145
BspMAI	CTGCAG	1 cut(s)	74
BspT107I	GGYRCC	2 cut(s)	17, 143
BspTI	CTTAAG	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	237, 416
BssECI	CCNNGG	8 cut(s)	33, 76, 109, 216, 363, 386, 570, 571
BssHII	GCGCGC	1 cut(s)	114
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	3 cut(s)	18, 144, 321
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	248, 572
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	3 cut(s)	18, 144, 321
BstAFI	CTTAAG	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	622
BstC8I	GCNNGC	3 cut(s)	41, 116, 260
BstDEI	CTNAG	2 cut(s)	342, 440
BstDSI	CCRYGG	2 cut(s)	33, 76
BstF5I	GGATG	2 cut(s)	487, 517
BstFNI	CGCG	2 cut(s)	99, 116
BstH2I	RGCGCY	2 cut(s)	21, 147
BstHHI	GCGC	4 cut(s)	20, 116, 118, 146
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	4 cut(s)	18, 55, 93, 453
BstMBI	GATC	1 cut(s)	189
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 78
BstNI	CCWGG	2 cut(s)	248, 572
BstSCI	CCNGG	3 cut(s)	246, 327, 570
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	2 cut(s)	99, 116
BstV1I	GCAGC	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	759
BsuRI	GGCC	4 cut(s)	39, 81, 377, 455
BtgI	CCRYGG	2 cut(s)	33, 76
BtgZI	GCGATG	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	487, 517
BtsIMutI	CAGTG	2 cut(s)	230, 363
Cac8I	GCNNGC	3 cut(s)	41, 116, 260
CciI	TCATGA	1 cut(s)	709
CfoI	GCGC	4 cut(s)	20, 116, 118, 146
Cfr13I	GGNCC	2 cut(s)	37, 38
Csp6I	GTAC	3 cut(s)	244, 444, 623
CviAII	CATG	3 cut(s)	275, 626, 710
CviQI	GTAC	3 cut(s)	244, 444, 623
DdeI	CTNAG	2 cut(s)	342, 440
DinI	GGCGCC	2 cut(s)	19, 145
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EaeI	YGGCCR	2 cut(s)	375, 453
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	41, 336
Eco31I	GGTCTC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	681
Eco88I	CYCGRG	2 cut(s)	83, 119
EcoICRI	GAGCTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	246, 570
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	2 cut(s)	670, 676
EcoT38I	GRGCYC	2 cut(s)	41, 336
EgeI	GGCGCC	2 cut(s)	19, 145
EheI	GGCGCC	2 cut(s)	19, 145
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	2 cut(s)	55, 453
FaeI	CATG	3 cut(s)	278, 629, 713
FatI	CATG	3 cut(s)	274, 625, 709
FauI	CCCGC	2 cut(s)	48, 609
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	2 cut(s)	73, 161
FokI	GGATG	2 cut(s)	494, 524
FriOI	GRGCYC	2 cut(s)	41, 336
Fsp4HI	GCNGC	2 cut(s)	73, 161
GlaI	GCGC	4 cut(s)	19, 115, 117, 145
GluI	GCNGC	2 cut(s)	73, 161
HaeII	RGCGCY	2 cut(s)	21, 147
HaeIII	GGCC	4 cut(s)	39, 81, 377, 455
HapII	CCGG	3 cut(s)	21, 329, 456
HhaI	GCGC	4 cut(s)	20, 116, 118, 146
Hin1I	GRCGYC	3 cut(s)	18, 144, 321
Hin1II	CATG	3 cut(s)	278, 629, 713
Hin6I	GCGC	4 cut(s)	18, 114, 116, 144
HinP1I	GCGC	4 cut(s)	18, 114, 116, 144
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	4 cut(s)	86, 311, 637, 749
HpaII	CCGG	3 cut(s)	21, 329, 456
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	3 cut(s)	61, 542, 604
Hpy188I	TCNGA	3 cut(s)	194, 316, 735
Hpy188III	TCNNGA	4 cut(s)	121, 133, 398, 710
Hpy8I	GTNNAC	3 cut(s)	61, 542, 604
Hpy99I	CGWCG	2 cut(s)	182, 185
HpyAV	CCTTC	2 cut(s)	139, 420
HpyCH4IV	ACGT	3 cut(s)	57, 183, 321
HpyCH4V	TGCA	4 cut(s)	72, 522, 668, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 78
HpyF3I	CTNAG	2 cut(s)	342, 440
HpySE526I	ACGT	3 cut(s)	57, 183, 321
Hsp92I	GRCGYC	3 cut(s)	18, 144, 321
Hsp92II	CATG	3 cut(s)	278, 629, 713
HspAI	GCGC	4 cut(s)	18, 114, 116, 144
KasI	GGCGCC	2 cut(s)	17, 143
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	3 cut(s)	255, 655, 683
MaeII	ACGT	3 cut(s)	57, 183, 321
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	4 cut(s)	309, 312, 374, 674
MhlI	GDGCHC	2 cut(s)	41, 336
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	152, 350, 392, 596
MluNI	TGGCCA	1 cut(s)	377
Mly113I	GGCGCC	2 cut(s)	18, 144
MlyI	GAGTC	3 cut(s)	95, 646, 758
MmeI	TCCRAC	2 cut(s)	411, 489
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	2 cut(s)	670, 676
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	3 cut(s)	420, 696, 756
Msp20I	TGGCCA	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	3 cut(s)	21, 329, 456
MspR9I	CCNGG	3 cut(s)	248, 329, 572
MvaI	CCWGG	2 cut(s)	248, 572
MvnI	CGCG	2 cut(s)	99, 116
MwoI	GCNNNNNNNGC	2 cut(s)	72, 78
NarI	GGCGCC	2 cut(s)	18, 144
NciI	CCSGG	1 cut(s)	329
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	3 cut(s)	278, 629, 713
NlaIV	GGNNCC	3 cut(s)	19, 39, 145
NmeAIII	GCCGAG	2 cut(s)	90, 367
NsiI	ATGCAT	2 cut(s)	670, 676
PaeR7I	CTCGAG	2 cut(s)	83, 119
PagI	TCATGA	1 cut(s)	709
PasI	CCCWGGG	1 cut(s)	571
PauI	GCGCGC	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	4 cut(s)	54, 90, 117, 174
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	74, 162
Ple19I	CGATCG	1 cut(s)	192
PleI	GAGTC	3 cut(s)	94, 645, 757
PluTI	GGCGCC	2 cut(s)	21, 147
PpsI	GAGTC	3 cut(s)	94, 645, 757
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	246, 570
PspGI	CCWGG	2 cut(s)	246, 570
PspN4I	GGNNCC	3 cut(s)	19, 39, 145
PspOMI	GGGCCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	37, 38
PspXI	VCTCGAGB	1 cut(s)	83
PstI	CTGCAG	1 cut(s)	74
PteI	GCGCGC	1 cut(s)	114
PvuI	CGATCG	1 cut(s)	192
RsaI	GTAC	3 cut(s)	245, 445, 624
RsaNI	GTAC	3 cut(s)	244, 444, 623
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	420, 696, 756
SatI	GCNGC	2 cut(s)	73, 161
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	2 cut(s)	37, 38
ScaI	AGTACT	1 cut(s)	445
SchI	GAGTC	3 cut(s)	95, 646, 758
ScrFI	CCNGG	3 cut(s)	248, 329, 572
SduI	GDGCHC	2 cut(s)	41, 336
SfaNI	GCATC	3 cut(s)	255, 655, 683
SfcI	CTRYAG	1 cut(s)	70
SfoI	GGCGCC	2 cut(s)	19, 145
Sfr274I	CTCGAG	2 cut(s)	83, 119
SlaI	CTCGAG	2 cut(s)	83, 119
SmlI	CTYRAG	3 cut(s)	83, 119, 695
SmoI	CTYRAG	3 cut(s)	83, 119, 695
Sse9I	AATT	4 cut(s)	152, 350, 392, 596
SsiI	CCGC	5 cut(s)	41, 64, 97, 160, 616
SspDI	GGCGCC	2 cut(s)	17, 143
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	246, 327, 570
StyI	CCWWGG	1 cut(s)	216
TaiI	ACGT	3 cut(s)	60, 186, 324
TaqI	TCGA	5 cut(s)	84, 120, 132, 168, 188
TasI	AATT	4 cut(s)	152, 350, 392, 596
TatI	WGTACW	2 cut(s)	443, 622
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	3 cut(s)	420, 696, 756
Tru9I	TTAA	3 cut(s)	420, 696, 756
TscAI	CASTG	2 cut(s)	237, 363
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	4 cut(s)	263, 498, 573, 698
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	237, 363
Van91I	CCANNNNNTGG	1 cut(s)	156
Vha464I	CTTAAG	1 cut(s)	695
XapI	RAATTY	1 cut(s)	152
XhoI	CTCGAG	2 cut(s)	83, 119
ZraI	GACGTC	1 cut(s)	322
ZrmI	AGTACT	1 cut(s)	445
Zsp2I	ATGCAT	2 cut(s)	670, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.