Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8353625.1

Orthogroup ID

OG0031014

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 212

Gene Structure 211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8353625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 211 bp

atgcttctccaaacctcatctcaccacctcaccgcctctctctcttcctccctctcctactctcgtcccctcccctccaaaattccatctttgaccctccctcgttccgtaaattaccaccggctcaccatctcctcctcctccatatcccaagcccacaactatggcactgtcgactacgagaggaggcccatcgtcaaatggaacgcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR TPR_8

Protein Analysis

70

Amino Acids

7.84

Weight (kDa)

10.27

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031014)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8353625.1_g000001 Rmu_ssc0000255.1_g000083

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	81
AoxI	GGCC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	3 cut(s)	14, 22, 118
BccI	CCATC	3 cut(s)	94, 137, 200
BmgT120I	GGNCC	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	120
BseRI	GAGGAG	4 cut(s)	124, 127, 130, 199
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	189
CviJI	RGCY	3 cut(s)	124, 155, 190
CviKI_1	RGCY	3 cut(s)	124, 155, 190
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
FaiI	YATR	2 cut(s)	146, 165
FaqI	GGGAC	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	3 cut(s)	14, 22, 118
Hpy166II	GTNNAC	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	172
LpnPI	CCDG	1 cut(s)	134
MboII	GAAGA	1 cut(s)	36
MluCI	AATT	2 cut(s)	81, 112
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	173
Sau96I	GGNCC	1 cut(s)	189
SetI	ASST	2 cut(s)	17, 30
SgeI	CNNG	5 cut(s)	75, 114, 133, 164, 193
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	2 cut(s)	81, 112
SsiI	CCGC	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	81, 112
TscAI	CASTG	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.