Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8356833.1

Orthogroup ID

OG0031389

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1064

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8356833.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 610 bp

agacagcattgaagcttcaaactatgattggtgatattgaagatgctgtatcttccaccatgaagaaaaactcatggaagcattccttgaaacagaattctgaagaactgcgtctggttgctattaaaacccttaaactgacagaagacatgttaacttcagttacaaagacgcaccctcaatgggcgcatcttgtgtcagcagttgatcatagagtagatagggctctggccattctaaggccccaggctatagcagatcacagggcacttcttacttcacttggatggccaccacctctttcctcaactccagattcagggagatcaaatgatgttcaaaatcctcttttcacaatgcaaggagaccttaaagaccagtactatgaaaactttcttgccctctgcagcctacaggagttgcaaagacgaagaaaattgcgacaacttcagggatataatcgcgaacttgctctgtaccagccactttgggtgattgaagagcttgtaaatcccatagcattggcatcccaacgccatttctcaaaatggatcgacaagccagaatttatatttgctcttgtctacaagatcaccagggattatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

202

Amino Acids

23.29

Weight (kDa)

9.16

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031389)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8356833.1_g000001 Rmu_sc0007457.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	584
AccII	CGCG	1 cut(s)	464
AclWI	GGATC	1 cut(s)	559
AcoI	YGGCCR	2 cut(s)	230, 289
AcsI	RAATTY	2 cut(s)	96, 565
AcuI	CTGAAG	3 cut(s)	122, 143, 433
AfaI	GTAC	2 cut(s)	382, 478
AfiI	CCNNNNNNNGG	3 cut(s)	183, 239, 319
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	6 cut(s)	12, 19, 40, 90, 340, 499
AjnI	CCWGG	2 cut(s)	245, 595
AluBI	AGCT	2 cut(s)	15, 504
AluI	AGCT	2 cut(s)	15, 504
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	3 cut(s)	230, 241, 289
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	96, 565
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	43, 504, 585
BaeGI	GKGCMC	1 cut(s)	270
BalI	TGGCCA	2 cut(s)	232, 291
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	281
BciT130I	CCWGG	2 cut(s)	247, 597
BclI	TGATCA	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	3 cut(s)	251, 405, 412
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	247, 597
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	247, 597
BmsI	GCATC	3 cut(s)	33, 198, 535
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	245, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 239, 319
Bse1I	ACTGG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	247, 597
BseDI	CCNNGG	2 cut(s)	245, 596
BseGI	GGATG	2 cut(s)	292, 526
BseLI	CCNNNNNNNGG	3 cut(s)	183, 239, 319
BseNI	ACTGG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	3 cut(s)	232, 243, 291
BslI	CCNNNNNNNGG	3 cut(s)	183, 239, 319
BsmAI	GTCTC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	232, 243, 291
Bso31I	GGTCTC	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	228, 270
Bsp143I	GATC	5 cut(s)	207, 258, 325, 551, 590
Bsp68I	TCGCGA	1 cut(s)	464
BspANI	GGCC	3 cut(s)	232, 243, 291
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	559
BspQI	GCTCTTC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	245, 596
BssMI	GATC	5 cut(s)	207, 258, 325, 551, 590
Bst2UI	CCWGG	2 cut(s)	247, 597
Bst6I	CTCTTC	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	292, 526
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	5 cut(s)	210, 261, 328, 554, 593
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	5 cut(s)	207, 258, 325, 551, 590
BstNI	CCWGG	2 cut(s)	247, 597
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	245, 595
BstSFI	CTRYAG	3 cut(s)	251, 405, 412
BstSLI	GKGCMC	1 cut(s)	270
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	232, 243, 291
BtsCI	GGATG	2 cut(s)	292, 526
BtuMI	TCGCGA	1 cut(s)	464
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	2 cut(s)	100, 180
Csp6I	GTAC	2 cut(s)	381, 477
CviAII	CATG	3 cut(s)	60, 74, 150
CviQI	GTAC	2 cut(s)	381, 477
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	5 cut(s)	209, 260, 327, 553, 592
DpnII	GATC	5 cut(s)	207, 258, 325, 551, 590
EaeI	YGGCCR	2 cut(s)	230, 289
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	359
Eco57I	CTGAAG	3 cut(s)	122, 143, 433
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	245, 595
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	3 cut(s)	63, 77, 153
FalI	AAGNNNNNCTT	4 cut(s)	70, 102, 353, 385
FatI	CATG	3 cut(s)	59, 73, 149
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	584
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	2 cut(s)	299, 513
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	408
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	232, 243, 291
HgaI	GACGC	2 cut(s)	100, 180
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	63, 77, 153
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	1 cut(s)	316
HpaI	GTTAAC	1 cut(s)	155
HphI	GGTGA	3 cut(s)	43, 504, 585
Hpy166II	GTNNAC	2 cut(s)	155, 585
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	2 cut(s)	313, 463
Hpy8I	GTNNAC	2 cut(s)	155, 585
HpyCH4V	TGCA	3 cut(s)	360, 407, 423
HpyF3I	CTNAG	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	63, 77, 153
HspAI	GCGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	207
KspAI	GTTAAC	1 cut(s)	155
Kzo9I	GATC	5 cut(s)	207, 258, 325, 551, 590
LguI	GCTCTTC	1 cut(s)	494
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	3 cut(s)	33, 198, 535
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	5 cut(s)	209, 260, 327, 553, 592
MboI	GATC	5 cut(s)	207, 258, 325, 551, 590
MboII	GAAGA	7 cut(s)	44, 52, 75, 115, 157, 443, 511
MhlI	GDGCHC	2 cut(s)	228, 270
MlsI	TGGCCA	2 cut(s)	232, 291
MluCI	AATT	3 cut(s)	96, 436, 565
MluNI	TGGCCA	2 cut(s)	232, 291
MnlI	CCTC	5 cut(s)	188, 308, 315, 356, 412
Mox20I	TGGCCA	2 cut(s)	232, 291
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	2 cut(s)	232, 291
MseI	TTAA	4 cut(s)	125, 134, 154, 371
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	2 cut(s)	232, 291
MspR9I	CCNGG	2 cut(s)	247, 597
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	247, 597
MvnI	CGCG	1 cut(s)	464
NdeII	GATC	5 cut(s)	207, 258, 325, 551, 590
NlaIII	CATG	3 cut(s)	63, 77, 153
NlaIV	GGNNCC	1 cut(s)	244
NruI	TCGCGA	1 cut(s)	464
NspI	RCATGY	1 cut(s)	153
PciI	ACATGT	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	494
PctI	GAATGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	409
PscI	ACATGT	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	245, 595
PspGI	CCWGG	2 cut(s)	245, 595
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	409
RruI	TCGCGA	1 cut(s)	464
RsaI	GTAC	2 cut(s)	382, 478
RsaNI	GTAC	2 cut(s)	381, 477
RseI	CAYNNNNRTG	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	4 cut(s)	125, 134, 154, 371
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	5 cut(s)	207, 258, 325, 551, 590
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	382
ScrFI	CCNGG	2 cut(s)	247, 597
SduI	GDGCHC	2 cut(s)	228, 270
SetI	ASST	4 cut(s)	17, 300, 371, 506
SfaNI	GCATC	3 cut(s)	33, 198, 535
SfcI	CTRYAG	3 cut(s)	251, 405, 412
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	3 cut(s)	96, 436, 565
StyD4I	CCNGG	2 cut(s)	245, 595
TaqI	TCGA	1 cut(s)	554
TasI	AATT	3 cut(s)	96, 436, 565
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	4 cut(s)	125, 134, 154, 371
Tru9I	TTAA	4 cut(s)	125, 134, 154, 371
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	76, 401
XapI	RAATTY	2 cut(s)	96, 565
XceI	RCATGY	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	392
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.