ATP-dependent Clp protease proteolytic subunit
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom07g03040 |
| rosa_multiflora | Rmu_co8375257.1_g000001 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 254 |
| AccB1I | GGYRCC | 1 cut(s) | 254 |
| AccI | GTMKAC | 1 cut(s) | 7 |
| AclWI | GGATC | 1 cut(s) | 316 |
| AcsI | RAATTY | 2 cut(s) | 274, 294 |
| AfaI | GTAC | 2 cut(s) | 29, 256 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 91 |
| AgsI | TTSAA | 2 cut(s) | 46, 251 |
| AjnI | CCWGG | 3 cut(s) | 84, 125, 178 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 187, 219 |
| AluBI | AGCT | 2 cut(s) | 134, 289 |
| AluI | AGCT | 2 cut(s) | 134, 289 |
| AlwI | GGATC | 1 cut(s) | 316 |
| ApoI | RAATTY | 2 cut(s) | 274, 294 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 213, 245 |
| Asp718I | GGTACC | 1 cut(s) | 254 |
| BanI | GGYRCC | 1 cut(s) | 254 |
| BccI | CCATC | 1 cut(s) | 164 |
| BciT130I | CCWGG | 3 cut(s) | 86, 127, 180 |
| BfaI | CTAG | 1 cut(s) | 135 |
| Bme1390I | CCNGG | 3 cut(s) | 86, 127, 180 |
| BmiI | GGNNCC | 1 cut(s) | 256 |
| BmrFI | CCNGG | 3 cut(s) | 86, 127, 180 |
| BsaJI | CCNNGG | 4 cut(s) | 125, 126, 179, 282 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 310, 340 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 91 |
| BseBI | CCWGG | 3 cut(s) | 86, 127, 180 |
| BseDI | CCNNGG | 4 cut(s) | 125, 126, 179, 282 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BseRI | GAGGAG | 1 cut(s) | 107 |
| BshNI | GGYRCC | 1 cut(s) | 254 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 91 |
| Bsp143I | GATC | 1 cut(s) | 308 |
| BspHI | TCATGA | 1 cut(s) | 117 |
| BspLI | GGNNCC | 1 cut(s) | 256 |
| BspPI | GGATC | 1 cut(s) | 316 |
| BspT107I | GGYRCC | 1 cut(s) | 254 |
| BssECI | CCNNGG | 4 cut(s) | 125, 126, 179, 282 |
| BssMI | GATC | 1 cut(s) | 308 |
| BssNAI | GTATAC | 1 cut(s) | 8 |
| Bst1107I | GTATAC | 1 cut(s) | 8 |
| Bst2UI | CCWGG | 3 cut(s) | 86, 127, 180 |
| Bst4CI | ACNGT | 1 cut(s) | 107 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 359 |
| BstDEI | CTNAG | 1 cut(s) | 312 |
| BstKTI | GATC | 1 cut(s) | 311 |
| BstMBI | GATC | 1 cut(s) | 308 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 359 |
| BstNI | CCWGG | 3 cut(s) | 86, 127, 180 |
| BstSCI | CCNGG | 3 cut(s) | 84, 125, 178 |
| BstX2I | RGATCY | 1 cut(s) | 308 |
| BstYI | RGATCY | 1 cut(s) | 308 |
| BstZ17I | GTATAC | 1 cut(s) | 8 |
| CciI | TCATGA | 1 cut(s) | 117 |
| CsiI | ACCWGGT | 1 cut(s) | 84 |
| Csp6I | GTAC | 2 cut(s) | 28, 255 |
| CviAII | CATG | 1 cut(s) | 118 |
| CviJI | RGCY | 4 cut(s) | 76, 134, 178, 289 |
| CviKI_1 | RGCY | 4 cut(s) | 76, 134, 178, 289 |
| CviQI | GTAC | 2 cut(s) | 28, 255 |
| DdeI | CTNAG | 1 cut(s) | 312 |
| DpnI | GATC | 1 cut(s) | 310 |
| DpnII | GATC | 1 cut(s) | 308 |
| EcoRII | CCWGG | 3 cut(s) | 84, 125, 178 |
| FaeI | CATG | 1 cut(s) | 121 |
| FaiI | YATR | 5 cut(s) | 8, 119, 144, 239, 367 |
| FatI | CATG | 1 cut(s) | 117 |
| FblI | GTMKAC | 1 cut(s) | 7 |
| FspBI | CTAG | 1 cut(s) | 135 |
| Hin1II | CATG | 1 cut(s) | 121 |
| HinfI | GANTC | 3 cut(s) | 63, 121, 203 |
| Hpy166II | GTNNAC | 1 cut(s) | 8 |
| Hpy188I | TCNGA | 2 cut(s) | 286, 301 |
| Hpy188III | TCNNGA | 4 cut(s) | 60, 118, 267, 329 |
| Hpy8I | GTNNAC | 1 cut(s) | 8 |
| HpyAV | CCTTC | 2 cut(s) | 245, 317 |
| HpyCH4III | ACNGT | 1 cut(s) | 107 |
| HpyCH4V | TGCA | 2 cut(s) | 191, 362 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 359 |
| HpyF3I | CTNAG | 1 cut(s) | 312 |
| Hsp92II | CATG | 1 cut(s) | 121 |
| KpnI | GGTACC | 1 cut(s) | 258 |
| Kzo9I | GATC | 1 cut(s) | 308 |
| LmnI | GCTCC | 1 cut(s) | 286 |
| LpnPI | CCDG | 9 cut(s) | 54, 71, 98, 112, 139, 165, 192, 217, 280 |
| MabI | ACCWGGT | 1 cut(s) | 84 |
| MaeI | CTAG | 1 cut(s) | 135 |
| MalI | GATC | 1 cut(s) | 310 |
| MboI | GATC | 1 cut(s) | 308 |
| MfeI | CAATTG | 1 cut(s) | 195 |
| MflI | RGATCY | 1 cut(s) | 308 |
| MluCI | AATT | 6 cut(s) | 12, 41, 112, 195, 274, 294 |
| MnlI | CCTC | 5 cut(s) | 85, 88, 151, 222, 292 |
| MseI | TTAA | 1 cut(s) | 39 |
| MspR9I | CCNGG | 3 cut(s) | 86, 127, 180 |
| MunI | CAATTG | 1 cut(s) | 195 |
| MvaI | CCWGG | 3 cut(s) | 86, 127, 180 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 359 |
| NdeII | GATC | 1 cut(s) | 308 |
| NlaIII | CATG | 1 cut(s) | 121 |
| NlaIV | GGNNCC | 1 cut(s) | 256 |
| PagI | TCATGA | 1 cut(s) | 117 |
| PasI | CCCWGGG | 1 cut(s) | 126 |
| PfeI | GAWTC | 3 cut(s) | 63, 121, 203 |
| Psp6I | CCWGG | 3 cut(s) | 84, 125, 178 |
| PspGI | CCWGG | 3 cut(s) | 84, 125, 178 |
| PspN4I | GGNNCC | 1 cut(s) | 256 |
| PsuI | RGATCY | 1 cut(s) | 308 |
| RsaI | GTAC | 2 cut(s) | 29, 256 |
| RsaNI | GTAC | 2 cut(s) | 28, 255 |
| SaqAI | TTAA | 1 cut(s) | 39 |
| Sau3AI | GATC | 1 cut(s) | 308 |
| ScrFI | CCNGG | 3 cut(s) | 86, 127, 180 |
| SetI | ASST | 9 cut(s) | 90, 136, 162, 214, 256, 291, 328, 346, 358 |
| SexAI | ACCWGGT | 1 cut(s) | 84 |
| Sse9I | AATT | 6 cut(s) | 12, 41, 112, 195, 274, 294 |
| SspI | AATATT | 1 cut(s) | 54 |
| SspMI | CTAG | 1 cut(s) | 135 |
| StyD4I | CCNGG | 3 cut(s) | 84, 125, 178 |
| TaaI | ACNGT | 1 cut(s) | 107 |
| TasI | AATT | 6 cut(s) | 12, 41, 112, 195, 274, 294 |
| TfiI | GAWTC | 3 cut(s) | 63, 121, 203 |
| Tru1I | TTAA | 1 cut(s) | 39 |
| Tru9I | TTAA | 1 cut(s) | 39 |
| TspDTI | ATGAA | 2 cut(s) | 106, 134 |
| XapI | RAATTY | 2 cut(s) | 274, 294 |
| XmiI | GTMKAC | 1 cut(s) | 7 |
| XspI | CTAG | 1 cut(s) | 135 |