Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8384703.1

Orthogroup ID

OG0029472

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1133

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8384703.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 746 bp

atggttgggaatttgaagacgcagagccaccactctgtggctgtgaggctgaatgagcaaatgggggccaaaaagggcttcacttttattcaggcctacagagcttggttcccaaagctgttgatgctttggattctggtgatggcatatttgagcttgtcaatctacaattacatggatgctgataacaaagtgagaagggtggaagtgcttagtagcatgtgtgatcagagagcaagaatgttgcaagatcagttcaatgttagtgttaatcatgtgcatgccctggccatccttgtttcaacatttcattacctcaagaacccatcagcaattgatcaggaaacttttgcagaatacacagccagaactgccttcgagaggcctctattaagtggggtggcctatgcacaaagagttgttaattcggagagggaaagtttcgaaaggcaaaatggctggacgataaagacgatggagagggagccctcacccatccgagatgagtacgcacctgtaattttctcgcaggaaaccgtctcttacattgagtcaattgacatgatgtctggggaggaggacagggaaaacattttaagggctagggctactggaaaagcagttctgaccagtccattcaggctgctcagttcacaccatcttggtgttgtgctgactttccctgtttacaaatccaagctccctccaaacccaactgtggaggagcgcataaaagcagcttccgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004721 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008152 GO:0008272 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009743 GO:0009744 GO:0009755 GO:0009784 GO:0009790 GO:0009884 GO:0009885 GO:0009987 GO:0009991 GO:0010015 GO:0010029 GO:0010033 GO:0010035 GO:0010086 GO:0012505 GO:0015698 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016787 GO:0016788 GO:0016791 GO:0018106 GO:0018193 GO:0018202 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022622 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032870 GO:0033500 GO:0033554 GO:0034285 GO:0035556 GO:0036211 GO:0038023 GO:0042221 GO:0042578 GO:0042592 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048509 GO:0048580 GO:0048598 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071470 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0072348 GO:0098542 GO:0099402 GO:0104004 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1905392 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CHASE HATPase_c HisKA Response_reg

Protein Analysis

249

Amino Acids

28.44

Weight (kDa)

8.9

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029472)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g01370
rosa_multiflora	Rmu_co8384703.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	10
AdeI	CACNNNGTG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	3 cut(s)	37, 381, 718
AgsI	TTSAA	3 cut(s)	16, 259, 303
AhdI	GACNNNNNGTC	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	606, 638
AluBI	AGCT	5 cut(s)	104, 118, 156, 700, 740
AluI	AGCT	5 cut(s)	104, 118, 156, 700, 740
Alw26I	GTCTC	1 cut(s)	544
AoxI	GGCC	5 cut(s)	66, 93, 288, 383, 402
ApeKI	GCWGC	2 cut(s)	643, 737
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	151, 483
AsuII	TTCGAA	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	630
BccI	CCATC	6 cut(s)	136, 299, 334, 469, 503, 666
BciT130I	CCWGG	1 cut(s)	287
BclI	TGATCA	2 cut(s)	226, 337
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	2 cut(s)	644, 738
BlsI	GCNGC	2 cut(s)	645, 739
Bme1390I	CCNGG	1 cut(s)	287
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	3 cut(s)	67, 110, 486
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	114, 169
BpiI	GAAGAC	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 381, 718
Bse1I	ACTGG	2 cut(s)	616, 630
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	3 cut(s)	184, 291, 495
BseLI	CCNNNNNNNGG	3 cut(s)	37, 381, 718
BseMII	CTCAG	1 cut(s)	661
BseNI	ACTGG	2 cut(s)	616, 630
BseRI	GAGGAG	2 cut(s)	590, 737
BseXI	GCAGC	1 cut(s)	630
BshFI	GGCC	5 cut(s)	68, 95, 290, 385, 404
BsiSI	CCGG	1 cut(s)	744
BslI	CCNNNNNNNGG	3 cut(s)	37, 381, 718
BsmAI	GTCTC	1 cut(s)	544
BsmBI	CGTCTC	1 cut(s)	544
BsnI	GGCC	5 cut(s)	68, 95, 290, 385, 404
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	226, 250, 337
BspANI	GGCC	5 cut(s)	68, 95, 290, 385, 404
BspCNI	CTCAG	1 cut(s)	660
BspLI	GGNNCC	3 cut(s)	67, 110, 486
BspT104I	TTCGAA	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	616, 630
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	226, 250, 337
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	538, 718
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	212, 647
BstENI	CCTNNNNNAGG	1 cut(s)	379
BstF5I	GGATG	3 cut(s)	184, 291, 495
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	3 cut(s)	229, 253, 340
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	3 cut(s)	226, 250, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 101, 124, 371
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	223, 284
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	630
BstV2I	GAAGAC	1 cut(s)	23
BsuRI	GGCC	5 cut(s)	68, 95, 290, 385, 404
BtsCI	GGATG	3 cut(s)	184, 291, 495
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	1 cut(s)	729
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	5 cut(s)	175, 220, 275, 281, 562
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	2 cut(s)	212, 647
DpnI	GATC	3 cut(s)	228, 252, 339
DpnII	GATC	3 cut(s)	226, 250, 337
DraIII	CACNNNGTG	1 cut(s)	37
DriI	GACNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	565
Eco147I	AGGCCT	2 cut(s)	95, 385
Eco24I	GRGCYC	1 cut(s)	489
EcoNI	CCTNNNNNAGG	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	489
Esp3I	CGTCTC	1 cut(s)	544
FaeI	CATG	5 cut(s)	178, 223, 278, 284, 565
FaiI	YATR	8 cut(s)	148, 176, 221, 276, 282, 408, 563, 731
FatI	CATG	5 cut(s)	174, 219, 274, 280, 561
FbaI	TGATCA	2 cut(s)	226, 337
Fnu4HI	GCNGC	2 cut(s)	644, 738
FokI	GGATG	3 cut(s)	191, 278, 482
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	2 cut(s)	644, 738
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	2 cut(s)	644, 738
HaeIII	GGCC	5 cut(s)	68, 95, 290, 385, 404
HapII	CCGG	1 cut(s)	744
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	729
Hin1II	CATG	5 cut(s)	178, 223, 278, 284, 565
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HinfI	GANTC	2 cut(s)	133, 551
HpaII	CCGG	1 cut(s)	744
HphI	GGTGA	2 cut(s)	151, 483
Hpy166II	GTNNAC	2 cut(s)	653, 688
Hpy188I	TCNGA	4 cut(s)	231, 430, 500, 627
Hpy188III	TCNNGA	3 cut(s)	319, 341, 379
Hpy8I	GTNNAC	2 cut(s)	653, 688
HpyAV	CCTTC	2 cut(s)	192, 385
HpyCH4III	ACNGT	2 cut(s)	538, 718
HpyCH4V	TGCA	4 cut(s)	247, 280, 353, 410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 101, 124, 371
HpyF3I	CTNAG	2 cut(s)	212, 647
Hsp92II	CATG	5 cut(s)	178, 223, 278, 284, 565
HspAI	GCGC	1 cut(s)	727
Ksp22I	TGATCA	2 cut(s)	226, 337
Kzo9I	GATC	3 cut(s)	226, 250, 337
LmnI	GCTCC	3 cut(s)	484, 705, 724
Lsp1109I	GCAGC	1 cut(s)	630
LweI	GCATC	2 cut(s)	114, 169
MaeI	CTAG	1 cut(s)	603
MalI	GATC	3 cut(s)	228, 252, 339
MboI	GATC	3 cut(s)	226, 250, 337
MboII	GAAGA	1 cut(s)	28
MfeI	CAATTG	2 cut(s)	333, 555
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	6 cut(s)	10, 169, 333, 424, 519, 555
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	560
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	4 cut(s)	270, 392, 423, 596
MslI	CAYNNNNRTG	2 cut(s)	279, 663
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	744
MspR9I	CCNGG	1 cut(s)	287
MunI	CAATTG	2 cut(s)	333, 555
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	4 cut(s)	55, 101, 124, 371
NdeII	GATC	3 cut(s)	226, 250, 337
NlaIII	CATG	5 cut(s)	178, 223, 278, 284, 565
NlaIV	GGNNCC	3 cut(s)	67, 110, 486
NspI	RCATGY	2 cut(s)	223, 284
NspV	TTCGAA	1 cut(s)	444
PaeI	GCATGC	1 cut(s)	284
PceI	AGGCCT	2 cut(s)	95, 385
PcsI	WCGNNNNNNNCGW	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	645, 739
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	3 cut(s)	67, 110, 486
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	2 cut(s)	279, 663
SaqAI	TTAA	4 cut(s)	270, 392, 423, 596
SatI	GCNGC	2 cut(s)	644, 738
Sau3AI	GATC	3 cut(s)	226, 250, 337
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	489
SetI	ASST	7 cut(s)	106, 120, 158, 318, 517, 702, 742
SfaNI	GCATC	2 cut(s)	114, 169
SfcI	CTRYAG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	444
SmiMI	CAYNNNNRTG	2 cut(s)	279, 663
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	6 cut(s)	10, 169, 333, 424, 519, 555
SseBI	AGGCCT	2 cut(s)	95, 385
SspMI	CTAG	1 cut(s)	603
StuI	AGGCCT	2 cut(s)	95, 385
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	538, 718
TaqI	TCGA	2 cut(s)	378, 444
TasI	AATT	6 cut(s)	10, 169, 333, 424, 519, 555
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	4 cut(s)	270, 392, 423, 596
Tru9I	TTAA	4 cut(s)	270, 392, 423, 596
TseI	GCWGC	2 cut(s)	643, 737
TspDTI	ATGAA	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	2 cut(s)	223, 284
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.