Rmu_co8387699.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8387699.1
Physical Location & Seq
Forward (+)
682 .. 1200
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8387699.1_g000001.1.cds

Sequence Viewer

Length: 233 bp
atgccggccaaggacgacgccgccgccgagaaggagaagaaccttgagctcttcctgaaggtcggactggatgagcggacggccaaaaacaccatcgccaacaacaaggtcacggcgaatctaacggccgtcattgacgaggctggagttactgatggatgcagtcgaaccgttggtaatcttctatacacggttgctacaaagtttccggcaaatgcccttgtgcatcgccc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

78

Amino Acids

8.33

Weight (kDa)

6.55

Isoelectric Point (pI)

20.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029335)

Species Orthologous Gene IDs
pyrus_communis pycom07g26520
rosa_multiflora Rmu_co8387699.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 76
AciI CCGC 3 cut(s) 21, 24, 76
AcoI YGGCCR 3 cut(s) 6, 81, 126
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 18
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 51
AoxI GGCC 3 cut(s) 6, 81, 126
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 51
BccI CCATC 2 cut(s) 101, 149
BceAI ACGGC 4 cut(s) 96, 113, 129, 141
BisI GCNGC 2 cut(s) 21, 24
BlsI GCNGC 2 cut(s) 22, 25
BmsI GCATC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 9
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 76, 164
BseNI ACTGG 1 cut(s) 72
BseX3I CGGCCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 8, 83, 128
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 5, 209
BsnI GGCC 3 cut(s) 8, 83, 128
Bsp1286I GDGCHC 1 cut(s) 51
BspACI CCGC 3 cut(s) 21, 24, 76
BspANI GGCC 3 cut(s) 8, 83, 128
BspQI GCTCTTC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 172, 193
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 2 cut(s) 76, 164
BstMCI CGRYCG 1 cut(s) 129
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 3 cut(s) 8, 83, 128
BtgZI GCGATG 2 cut(s) 79, 212
BtsCI GGATG 2 cut(s) 76, 164
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 4
CseI GACGC 1 cut(s) 26
CviJI RGCY 5 cut(s) 8, 49, 83, 128, 143
CviKI_1 RGCY 5 cut(s) 8, 49, 83, 128, 143
EaeI YGGCCR 3 cut(s) 6, 81, 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 51
Eco52I CGGCCG 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 9
FaiI YATR 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 21, 24
FokI GGATG 2 cut(s) 83, 171
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 21, 24
GluI GCNGC 2 cut(s) 21, 24
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 3 cut(s) 8, 83, 128
HapII CCGG 2 cut(s) 5, 209
HgaI GACGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 18
HinfI GANTC 1 cut(s) 118
HpaII CCGG 2 cut(s) 5, 209
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 25, 52
HpyCH4III ACNGT 2 cut(s) 172, 193
HpyCH4V TGCA 2 cut(s) 162, 226
Hsp92I GRCGYC 1 cut(s) 18
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
LguI GCTCTTC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 18, 53, 68, 129, 222
LweI GCATC 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 109, 148
MbiI CCGCTC 1 cut(s) 76
MboII GAAGA 3 cut(s) 43, 49, 173
MhlI GDGCHC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 1 cut(s) 133
MroNI GCCGGC 1 cut(s) 4
MspI CCGG 2 cut(s) 5, 209
NaeI GCCGGC 1 cut(s) 6
NgoMIV GCCGGC 1 cut(s) 4
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 22, 25
Psp124BI GAGCTC 1 cut(s) 51
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 56
SatI GCNGC 2 cut(s) 21, 24
SduI GDGCHC 1 cut(s) 51
SetI ASST 4 cut(s) 45, 51, 63, 111
SfaNI GCATC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 3 cut(s) 21, 24, 76
SstI GAGCTC 1 cut(s) 51
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 172, 193
TaqI TCGA 1 cut(s) 166
TauI GCSGC 2 cut(s) 23, 26
TfiI GAWTC 1 cut(s) 118
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.