Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8390575.1

Orthogroup ID

OG0025530

Physical Location & Seq

Genomic Coordinates Forward (+)

77 .. 1155

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8390575.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgatggagttctttgagagtcttggagttgagatggagatatctgacatgtccttctcggcaagcttagacaaaggaaaaggctgtgaatggggtagtcgaaatggtctgtcgagcttgtttgcgcaaaagagcaacatgttaaatccatacttttggcaaatgcttcgagaaatcaccaagtttaagcatgatgccatcagttatcttgaggtgcatgagaacaatccggacattgatcgaaatgaaaccttggggaaatttatcgagtcccgtcactactccgaattatttcagaaggcttatcttgttccaatatgtggttcaatctggtcatgccctgcagaaggggttatgagcttctcagccttctccgttctttcgttttgtcgcaatcatcatctacttcagctatttggccgcccacaatggttaactgtcagatggcgttcacattgttatgtgaagaaggttagagaagtgctggagagtaaagggtgtcggataagaacaggttgtgaggtgcataaagtttccacaaccgatgagggtgagtgtttgaaattgttggataagacttcattgttccttttttcttgctctaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

202

Amino Acids

23.35

Weight (kDa)

7.58

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025530)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8390575.1_g000001 Rmu_sc0002294.1_g000007 Rmu_sc0005802.1_g000025

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	1 cut(s)	421
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	320, 347
AflIII	ACRYGT	2 cut(s)	48, 138
AgsI	TTSAA	2 cut(s)	327, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AluBI	AGCT	4 cut(s)	66, 117, 360, 412
AluI	AGCT	4 cut(s)	66, 117, 360, 412
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	1 cut(s)	418
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	169, 563
BccI	CCATC	3 cut(s)	28, 206, 438
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
BmsI	GCATC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 347
BseAI	TCCGGA	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	320, 347
BseMII	CTCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	320, 347
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	420
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	377
BspEI	TCCGGA	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	67, 364
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstNSI	RCATGY	2 cut(s)	52, 142
BstSFI	CTRYAG	1 cut(s)	342
BstXI	CCANNNNNNTGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	127
CviAII	CATG	5 cut(s)	49, 139, 191, 218, 336
CviJI	RGCY	8 cut(s)	66, 84, 117, 302, 360, 368, 412, 420
CviKI_1	RGCY	8 cut(s)	66, 84, 117, 302, 360, 368, 412, 420
DdeI	CTNAG	2 cut(s)	67, 364
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoRV	GATATC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	5 cut(s)	52, 142, 194, 221, 339
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	5 cut(s)	48, 138, 190, 217, 335
Fnu4HI	GCNGC	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	421
FspI	TGCGCA	1 cut(s)	126
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	421
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	5 cut(s)	52, 142, 194, 221, 339
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	2 cut(s)	19, 269
HpaI	GTTAAC	1 cut(s)	435
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	169, 563
Hpy166II	GTNNAC	2 cut(s)	435, 452
Hpy188I	TCNGA	5 cut(s)	46, 286, 297, 443, 504
Hpy188III	TCNNGA	3 cut(s)	170, 209, 230
Hpy8I	GTNNAC	2 cut(s)	435, 452
HpyAV	CCTTC	5 cut(s)	64, 292, 341, 379, 463
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	3 cut(s)	217, 344, 526
HpyF3I	CTNAG	2 cut(s)	67, 364
Hsp92II	CATG	5 cut(s)	52, 142, 194, 221, 339
HspAI	GCGC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	5 cut(s)	243, 316, 354, 470, 498
LweI	GCATC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	478
MluCI	AATT	3 cut(s)	260, 287, 563
MlyI	GAGTC	2 cut(s)	28, 278
MmeI	TCCRAC	2 cut(s)	482, 549
MnlI	CCTC	3 cut(s)	205, 514, 541
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	3 cut(s)	143, 186, 434
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	5 cut(s)	52, 142, 194, 221, 339
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	275
NsbI	TGCGCA	1 cut(s)	126
NspI	RCATGY	2 cut(s)	52, 142
PciI	ACATGT	2 cut(s)	48, 138
PdmI	GAANNNNTTC	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	2 cut(s)	27, 277
PpsI	GAGTC	2 cut(s)	27, 277
PscI	ACATGT	2 cut(s)	48, 138
PstI	CTGCAG	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	143, 186, 434
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	1 cut(s)	238
SchI	GAGTC	2 cut(s)	28, 278
SetI	ASST	9 cut(s)	68, 119, 216, 254, 362, 414, 474, 517, 525
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	260, 287, 563
SsiI	CCGC	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	5 cut(s)	100, 113, 169, 241, 267
TasI	AATT	3 cut(s)	260, 287, 563
TauI	GCSGC	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	143, 186, 434
Tru9I	TTAA	3 cut(s)	143, 186, 434
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	261, 570
TspGWI	ACGGA	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	2 cut(s)	52, 142
XmnI	GAANNNNTTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.