Rmu_co8395251.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8395251.1
OG0031360
Physical Location & Seq
Forward (+)
1 .. 409
409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8395251.1_g000001.1.cds

Sequence Viewer

Length: 248 bp
gaaaggatactgaggacgtggtaacccatttggccaggtttaaggtgcagtgcggccagtaccagaatgatgacatcctcaagtgcaagatctttggcacttctctatctggcgcgacttttagatggttttctaaactgcggctagggtcagtggttgattggccagccatggagaagctctttcgagagacttttggagctactgagcctaaggttgacttgacgtctctcacccagatggcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

81

Amino Acids

9.2

Weight (kDa)

7.99

Isoelectric Point (pI)

17.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031360)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8395251.1_g000001 Rmu_sc0006070.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 229
AccII CGCG 1 cut(s) 115
AciI CCGC 2 cut(s) 53, 141
AcoI YGGCCR 3 cut(s) 32, 54, 163
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 1 cut(s) 61
AhdI GACNNNNNGTC 1 cut(s) 225
AjiI CACGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 180, 202
AluI AGCT 2 cut(s) 180, 202
Alw26I GTCTC 2 cut(s) 184, 233
AoxI GGCC 4 cut(s) 32, 54, 163, 242
AspLEI GCGC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 225
AxyI CCTNAGG 1 cut(s) 212
BalI TGGCCA 2 cut(s) 34, 165
BccI CCATC 2 cut(s) 119, 234
BciT130I CCWGG 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 184, 233
BfaI CTAG 1 cut(s) 145
BglII AGATCT 1 cut(s) 89
BisI GCNGC 2 cut(s) 54, 142
BlsI GCNGC 2 cut(s) 55, 143
Bme1390I CCNGG 1 cut(s) 36
BmeRI GACNNNNNGTC 1 cut(s) 225
BmgBI CACGTC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 57
Bse21I CCTNAGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 4 cut(s) 34, 56, 165, 244
BsmAI GTCTC 2 cut(s) 184, 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 4 cut(s) 34, 56, 165, 244
Bsp143I GATC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 2 cut(s) 53, 141
BspANI GGCC 4 cut(s) 34, 56, 165, 244
BspCNI CTCAG 1 cut(s) 198
BspFNI CGCG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 89
BssNI GRCGYC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 11, 206, 212
BstDSI CCRYGG 1 cut(s) 170
BstEII GGTNACC 1 cut(s) 21
BstF5I GGATG 1 cut(s) 74
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 92
BstMAI GTCTC 2 cut(s) 184, 233
BstMBI GATC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 34
BstUI CGCG 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
Bsu36I CCTNAGG 1 cut(s) 212
BsuRI GGCC 4 cut(s) 34, 56, 165, 244
BtgI CCRYGG 1 cut(s) 170
BtrI CACGTC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 55, 158
Cac8I GCNNGC 1 cut(s) 167
CfoI GCGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 171
CviJI RGCY 9 cut(s) 34, 56, 144, 165, 169, 180, 202, 210, 244
CviKI_1 RGCY 9 cut(s) 34, 56, 144, 165, 169, 180, 202, 210, 244
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 3 cut(s) 11, 206, 212
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
DriI GACNNNNNGTC 1 cut(s) 225
EaeI YGGCCR 3 cut(s) 32, 54, 163
Eam1105I GACNNNNNGTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 21
EcoO65I GGTNACC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 1 cut(s) 174
FaiI YATR 1 cut(s) 172
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FatI CATG 1 cut(s) 170
Fnu4HI GCNGC 2 cut(s) 54, 142
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 2 cut(s) 54, 142
FspBI CTAG 1 cut(s) 145
GlaI GCGC 1 cut(s) 114
GluI GCNGC 2 cut(s) 54, 142
HaeIII GGCC 4 cut(s) 34, 56, 165, 244
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 1 cut(s) 174
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 17, 226
HpyCH4V TGCA 2 cut(s) 48, 86
HpyF3I CTNAG 3 cut(s) 11, 206, 212
HpySE526I ACGT 2 cut(s) 17, 226
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 1 cut(s) 174
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 6 cut(s) 21, 48, 70, 76, 95, 179
MaeI CTAG 1 cut(s) 145
MaeII ACGT 2 cut(s) 17, 226
MaeIII GTNAC 1 cut(s) 21
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MflI RGATCY 1 cut(s) 89
MlsI TGGCCA 2 cut(s) 34, 165
MluNI TGGCCA 2 cut(s) 34, 165
MnlI CCTC 2 cut(s) 6, 88
Mox20I TGGCCA 2 cut(s) 34, 165
MscI TGGCCA 2 cut(s) 34, 165
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 238
Msp20I TGGCCA 2 cut(s) 34, 165
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 115
NcoI CCATGG 1 cut(s) 170
NdeII GATC 1 cut(s) 89
NlaIII CATG 1 cut(s) 174
PkrI GCNGC 2 cut(s) 55, 143
Psp6I CCWGG 1 cut(s) 34
PspEI GGTNACC 1 cut(s) 21
PspGI CCWGG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 238
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 2 cut(s) 54, 142
Sau3AI GATC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 36
SetI ASST 7 cut(s) 20, 40, 47, 182, 204, 218, 229
SmiMI CAYNNNNRTG 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
SsiI CCGC 2 cut(s) 53, 141
SspMI CTAG 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 2 cut(s) 20, 229
TaqI TCGA 1 cut(s) 186
TauI GCSGC 2 cut(s) 56, 144
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 2 cut(s) 55, 158
TspRI CASTG 2 cut(s) 55, 158
XspI CTAG 1 cut(s) 145
ZraI GACGTC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.