Rmu_co8404923.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8404923.1
OG0031233
Physical Location & Seq
Reverse (-)
948 .. 1268
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8404923.1_g000002.1.cds

Sequence Viewer

Length: 321 bp
atggtactggacaaatggcaaaaagatagttttcgagttcggcagcaatctatgttgggaattagagctcggcttgaggagcttatggatggtcagtcaactgatgcagtgcaacttgagaagcaaaacctaatgagtaggttacaaagtttgctatctcaggaggaaattttttgccgacaacggtcaaaggttcaatggatgaaggacggagatcgcaacacaggtttctttcatcaaaaaacttccaatatgaggagaaagaatttgattcaggggttgtatgatgaagagggtacgtggtgtggggatgatacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

106

Amino Acids

12.58

Weight (kDa)

7.78

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031233)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8404923.1_g000002 Rmu_sc0002890.1_g000015

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 168, 265
AfaI GTAC 2 cut(s) 6, 298
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 2 cut(s) 68, 82
AluI AGCT 2 cut(s) 68, 82
Alw21I GWGCWC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 2 cut(s) 168, 265
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 83
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmsI GCATC 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 184
BpuEI CTTGAG 2 cut(s) 95, 137
BsaAI YACGTR 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 12
BseGI GGATG 3 cut(s) 94, 207, 316
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 2 cut(s) 92, 271
BseXI GCAGC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 12
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 94, 207, 316
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstPAI GACNNNNGTC 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 55
BtsCI GGATG 3 cut(s) 94, 207, 316
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Csp6I GTAC 2 cut(s) 5, 297
CviAII CATG 1 cut(s) 318
CviJI RGCY 3 cut(s) 68, 73, 82
CviKI_1 RGCY 3 cut(s) 68, 73, 82
CviQI GTAC 2 cut(s) 5, 297
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 1 cut(s) 321
FaiI YATR 5 cut(s) 53, 86, 254, 285, 319
FatI CATG 1 cut(s) 317
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 2 cut(s) 101, 214
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 44
Hin1II CATG 1 cut(s) 321
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 2 cut(s) 107, 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 1 cut(s) 321
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 146, 210, 260
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 94
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 141
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 3 cut(s) 60, 168, 265
MnlI CCTC 4 cut(s) 70, 157, 249, 286
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 321
NmeAIII GCCGAG 1 cut(s) 49
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 45
Ppu21I YACGTR 1 cut(s) 300
PshAI GACNNNNGTC 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 70
RsaI GTAC 2 cut(s) 6, 298
RsaNI GTAC 2 cut(s) 5, 297
SacI GAGCTC 1 cut(s) 70
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 214
SduI GDGCHC 1 cut(s) 70
SetI ASST 7 cut(s) 70, 84, 132, 143, 195, 229, 302
SfaNI GCATC 1 cut(s) 94
SgeI CNNG 9 cut(s) 20, 47, 81, 86, 128, 173, 237, 287, 312
SmlI CTYRAG 2 cut(s) 74, 116
SmoI CTYRAG 2 cut(s) 74, 116
Sse9I AATT 3 cut(s) 60, 168, 265
SstI GAGCTC 1 cut(s) 70
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 34
TasI AATT 3 cut(s) 60, 168, 265
TfiI GAWTC 1 cut(s) 271
TscAI CASTG 1 cut(s) 114
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 218, 224, 303
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 114
XapI RAATTY 2 cut(s) 168, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.