Rmu_co8443833.1_g000001

L-ascorbate oxidase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8443833.1
OG0029290
Physical Location & Seq
Reverse (-)
759 .. 1537
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8443833.1_g000001.1.cds

Sequence Viewer

Length: 489 bp
ctggctgattacttcaacattccgggagtttacaatctcggaagcattcctaccaatcctccaggaggaaatggtggctacctgcaaacctcagtcatgcacgccaacttccgagaatttgttgagattgttttccaaaattgggaagattctgtgcaatcatggcacattgacggctattcgttctttgtactggggatggatggaggacaatggactcaaggaagtagagcacgttacaatttgagagacacagttgcgcgctccactgttcaggtgtatccaaagtcatggactgcaatctccgtggcattggacaatgtgggaatatggaatgtgaggtctcagaattgggcaaggcagtacttgggacagcagttctatctgagagtatactctcctgctcattcatggagagatgaattaccaattccaagaaatgctattctttgtggcagggcaagaggtcgccacaccaggcctctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

162

Amino Acids

18.54

Weight (kDa)

9.46

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029290)

Species Orthologous Gene IDs
pyrus_communis pycom05g31600
rosa_multiflora Rmu_co8443833.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 393
AccII CGCG 1 cut(s) 262
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 2 cut(s) 192, 365
AfiI CCNNNNNNNGG 2 cut(s) 65, 142
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 2 cut(s) 61, 476
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 243, 348
AoxI GGCC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 2 cut(s) 262, 264
AsuC2I CCSGG 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
Bbv12I GWGCWC 1 cut(s) 235
BccI CCATC 2 cut(s) 193, 197
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 2 cut(s) 63, 478
BciVI GTATCC 1 cut(s) 291
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 243, 348
BfuAI ACCTGC 1 cut(s) 90
BfuI GTATCC 1 cut(s) 291
BmcAI AGTACT 1 cut(s) 365
Bme1390I CCNGG 3 cut(s) 24, 63, 478
BmrFI CCNGG 3 cut(s) 24, 63, 478
BmrI ACTGGG 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 142
Bse1I ACTGG 1 cut(s) 198
BseBI CCWGG 2 cut(s) 63, 478
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 204, 208
BseLI CCNNNNNNNGG 2 cut(s) 65, 142
BseMII CTCAG 3 cut(s) 105, 359, 377
BseNI ACTGG 1 cut(s) 198
BsePI GCGCGC 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 2 cut(s) 65, 142
BsmAI GTCTC 2 cut(s) 243, 348
BsmFI GGGAC 1 cut(s) 384
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 1 cut(s) 481
Bso31I GGTCTC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 235
BspANI GGCC 1 cut(s) 481
BspCNI CTCAG 3 cut(s) 104, 358, 378
BspFNI CGCG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 306
BssHII GCGCGC 1 cut(s) 260
BssNAI GTATAC 1 cut(s) 394
Bst1107I GTATAC 1 cut(s) 394
Bst2UI CCWGG 2 cut(s) 63, 478
Bst4CI ACNGT 2 cut(s) 256, 271
BstC8I GCNNGC 2 cut(s) 102, 262
BstDEI CTNAG 3 cut(s) 91, 345, 386
BstDSI CCRYGG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 204, 208
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 2 cut(s) 262, 264
BstMAI GTCTC 2 cut(s) 243, 348
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 2 cut(s) 63, 478
BstSCI CCNGG 3 cut(s) 22, 61, 476
BstUI CGCG 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 291
BstZ17I GTATAC 1 cut(s) 394
BsuI GTATCC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 204, 208
BtsIMutI CAGTG 1 cut(s) 267
BveI ACCTGC 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 102, 262
CfoI GCGC 2 cut(s) 262, 264
Csp6I GTAC 2 cut(s) 191, 364
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 4 cut(s) 97, 162, 291, 411
CviJI RGCY 4 cut(s) 5, 78, 177, 481
CviKI_1 RGCY 4 cut(s) 5, 78, 177, 481
CviQI GTAC 2 cut(s) 191, 364
DdeI CTNAG 3 cut(s) 91, 345, 386
Eco147I AGGCCT 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 348
EcoNI CCTNNNNNAGG 1 cut(s) 63
EcoRII CCWGG 2 cut(s) 61, 476
FaeI CATG 4 cut(s) 100, 165, 294, 414
FaiI YATR 6 cut(s) 98, 163, 292, 331, 394, 412
FaqI GGGAC 1 cut(s) 384
FatI CATG 4 cut(s) 96, 161, 290, 410
FblI GTMKAC 1 cut(s) 393
FokI GGATG 2 cut(s) 211, 215
GlaI GCGC 2 cut(s) 261, 263
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 481
HapII CCGG 1 cut(s) 23
HhaI GCGC 2 cut(s) 262, 264
Hin1II CATG 4 cut(s) 100, 165, 294, 414
Hin6I GCGC 2 cut(s) 260, 262
HinP1I GCGC 2 cut(s) 260, 262
HinfI GANTC 2 cut(s) 149, 217
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 31, 394
Hpy188I TCNGA 5 cut(s) 41, 113, 348, 387, 488
Hpy8I GTNNAC 2 cut(s) 31, 394
HpyCH4III ACNGT 2 cut(s) 256, 271
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 4 cut(s) 85, 100, 157, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 3 cut(s) 91, 345, 386
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 4 cut(s) 100, 165, 294, 414
HspAI GCGC 2 cut(s) 260, 262
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 9 cut(s) 36, 48, 75, 95, 179, 260, 414, 442, 463
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 236
MboII GAAGA 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 6 cut(s) 116, 139, 241, 349, 422, 429
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 6 cut(s) 59, 69, 100, 200, 333, 458
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 3 cut(s) 24, 63, 478
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 2 cut(s) 63, 478
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 24
NlaIII CATG 4 cut(s) 100, 165, 294, 414
PauI GCGCGC 1 cut(s) 260
PceI AGGCCT 1 cut(s) 481
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 149
PfoI TCCNGGA 2 cut(s) 22, 61
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 61, 476
PspGI CCWGG 2 cut(s) 61, 476
PteI GCGCGC 1 cut(s) 260
RsaI GTAC 2 cut(s) 192, 365
RsaNI GTAC 2 cut(s) 191, 364
ScaI AGTACT 1 cut(s) 365
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 3 cut(s) 24, 63, 478
SduI GDGCHC 1 cut(s) 235
SetI ASST 6 cut(s) 84, 92, 238, 279, 344, 469
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 6 cut(s) 116, 139, 241, 349, 422, 429
SseBI AGGCCT 1 cut(s) 481
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 3 cut(s) 22, 61, 476
TaaI ACNGT 2 cut(s) 256, 271
TaiI ACGT 1 cut(s) 238
TasI AATT 6 cut(s) 116, 139, 241, 349, 422, 429
TatI WGTACW 2 cut(s) 190, 363
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 399, 435
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 274
XagI CCTNNNNNAGG 1 cut(s) 63
XapI RAATTY 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.