Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000015.1

Orthogroup ID

OG0031031

Physical Location & Seq

Genomic Coordinates Forward (+)

178224 .. 180323

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgagggaggctttcacatatggtggcgtaacaaacccctcagactttctgcctgctttgaaatggtttgggagtggcgccaggtttgagaagaaggtgatggacttgagtaagaggatgaatgcgttcttgcaaggtttgattgatgagcagcagctgagtaaaactacatcaggtcagagtgaagcaagtacgatgatccaccatttactttctctgcaagaatcagagccggaatactacaccgaccaaattatcaaagggcatatactgaacctgggttttccacttttccatagaagaatttccacgatcttaatccaaccccgcccgagagatccggcatcaacctcctatcctgcgacggaatcgggttttgaagacataggagagatcgatcgatgggaagaaggtgttttgagttttgacggtagaggaggctgggaagactggaagagagaagctgagaaatctgggtcaaggttaaaagatgaggacataattggaaaagagagtaaaatttcattaaatgaatcctgttcactccgtgtttccatgaagcagttttccaaagctggtagtaggctgcttctcaatttcagctttgaggagaatcaattcggaccaaaagccgcttctacacactttaccaaacaccatagcattagcccaaaagcagaagcaggttcaaaagcacctccaaaatcaatcccaaactgggcctttgtctcctgcttgacgtgtttggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

250

Amino Acids

28.02

Weight (kDa)

6.67

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031031)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000015.1_g000040 Rmu_sc0009114.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	2 cut(s)	328, 633
AclWI	GGATC	2 cut(s)	193, 332
AcsI	RAATTY	2 cut(s)	303, 519
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	718
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	3 cut(s)	61, 380, 690
AjiI	CACGTC	1 cut(s)	741
AjnI	CCWGG	2 cut(s)	80, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	619, 651
AluBI	AGCT	4 cut(s)	157, 464, 575, 603
AluI	AGCT	4 cut(s)	157, 464, 575, 603
Alw26I	GTCTC	1 cut(s)	733
AlwI	GGATC	2 cut(s)	193, 332
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	720
ApeKI	GCWGC	3 cut(s)	151, 154, 586
ApoI	RAATTY	2 cut(s)	303, 519
Asp700I	GAANNNNTTC	3 cut(s)	125, 304, 617
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	623, 720
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	387, 453
BbvI	GCAGC	3 cut(s)	163, 166, 573
BccI	CCATC	2 cut(s)	94, 396
BciT130I	CCWGG	2 cut(s)	82, 278
BcoDI	GTCTC	1 cut(s)	733
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	4 cut(s)	152, 155, 587, 633
BlsI	GCNGC	4 cut(s)	153, 156, 588, 634
Bme1390I	CCNGG	2 cut(s)	82, 278
Bme18I	GGWCC	1 cut(s)	623
BmeT110I	CYCGRG	1 cut(s)	331
BmgBI	CACGTC	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	623, 720
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	82, 278
BmrI	ACTGGG	1 cut(s)	727
BmsI	GCATC	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	727
BpiI	GAAGAC	2 cut(s)	387, 453
BpuEI	CTTGAG	1 cut(s)	127
Bsa29I	ATCGAT	2 cut(s)	396, 400
BsaBI	GATNNNNATC	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse1I	ACTGG	2 cut(s)	455, 722
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	82, 278
BseCI	ATCGAT	2 cut(s)	396, 400
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMII	CTCAG	3 cut(s)	54, 149, 456
BseNI	ACTGG	2 cut(s)	455, 722
BseRI	GAGGAG	2 cut(s)	450, 623
BseXI	GCAGC	3 cut(s)	163, 166, 573
BseYI	CCCAGC	1 cut(s)	441
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	722
BshNI	GGYRCC	1 cut(s)	77
BshVI	ATCGAT	2 cut(s)	396, 400
BsiEI	CGRYCG	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	233, 341
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	1 cut(s)	733
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	722
BsoBI	CYCGRG	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	198, 312, 337, 393, 397
BspACI	CCGC	2 cut(s)	328, 633
BspANI	GGCC	1 cut(s)	722
BspCNI	CTCAG	3 cut(s)	53, 150, 457
BspDI	ATCGAT	2 cut(s)	396, 400
BspLI	GGNNCC	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	2 cut(s)	193, 332
BspT107I	GGYRCC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	455, 722
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	5 cut(s)	198, 312, 337, 393, 397
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	82, 278
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	449
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	3 cut(s)	40, 158, 465
BstF5I	GGATG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	5 cut(s)	201, 315, 340, 396, 400
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	5 cut(s)	198, 312, 337, 393, 397
BstMCI	CGRYCG	1 cut(s)	400
BstNI	CCWGG	2 cut(s)	82, 278
BstSCI	CCNGG	2 cut(s)	80, 276
BstV1I	GCAGC	3 cut(s)	163, 166, 573
BstV2I	GAAGAC	2 cut(s)	387, 453
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
Bsu15I	ATCGAT	2 cut(s)	396, 400
BsuRI	GGCC	1 cut(s)	722
BsuTUI	ATCGAT	2 cut(s)	396, 400
BtrI	CACGTC	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	623, 720
ClaI	ATCGAT	2 cut(s)	396, 400
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	1 cut(s)	556
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	3 cut(s)	40, 158, 465
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	5 cut(s)	200, 314, 339, 395, 399
DpnII	GATC	5 cut(s)	198, 312, 337, 393, 397
DraIII	CACNNNGTG	1 cut(s)	548
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	80, 276
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
FaeI	CATG	1 cut(s)	559
FaiI	YATR	9 cut(s)	19, 21, 267, 269, 297, 386, 500, 557, 660
FatI	CATG	1 cut(s)	555
FauI	CCCGC	1 cut(s)	335
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	4 cut(s)	152, 155, 587, 633
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	152, 155, 587, 633
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	4 cut(s)	152, 155, 587, 633
GsaI	CCCAGC	1 cut(s)	445
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	722
HapII	CCGG	2 cut(s)	233, 341
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	559
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	4 cut(s)	224, 368, 533, 613
HpaII	CCGG	2 cut(s)	233, 341
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	4 cut(s)	43, 180, 229, 623
Hpy8I	GTNNAC	1 cut(s)	542
Hpy99I	CGWCG	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	88, 404
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	740
HpyCH4V	TGCA	2 cut(s)	133, 220
HpyF3I	CTNAG	3 cut(s)	40, 158, 465
HpySE526I	ACGT	1 cut(s)	740
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	559
HspAI	GCGC	1 cut(s)	78
KasI	GGCGCC	1 cut(s)	77
Kzo9I	GATC	5 cut(s)	198, 312, 337, 393, 397
Lsp1109I	GCAGC	3 cut(s)	163, 166, 573
LweI	GCATC	1 cut(s)	353
MaeII	ACGT	1 cut(s)	740
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	5 cut(s)	200, 314, 339, 395, 399
MboI	GATC	5 cut(s)	198, 312, 337, 393, 397
MboII	GAAGA	6 cut(s)	103, 312, 392, 419, 458, 466
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	6 cut(s)	252, 303, 501, 519, 595, 617
Mly113I	GGCGCC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	8 cut(s)	49, 108, 361, 428, 431, 487, 601, 708
MroXI	GAANNNNTTC	3 cut(s)	125, 304, 617
MseI	TTAA	3 cut(s)	317, 485, 527
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	2 cut(s)	233, 341
MspR9I	CCNGG	2 cut(s)	82, 278
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	82, 278
NarI	GGCGCC	1 cut(s)	78
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	5 cut(s)	198, 312, 337, 393, 397
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	3 cut(s)	125, 304, 617
PfeI	GAWTC	4 cut(s)	224, 368, 533, 613
PkrI	GCNGC	4 cut(s)	153, 156, 588, 634
Ple19I	CGATCG	1 cut(s)	400
PluTI	GGCGCC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	80, 276
PspFI	CCCAGC	1 cut(s)	441
PspGI	CCWGG	2 cut(s)	80, 276
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	623, 720
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	337
PvuI	CGATCG	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	317, 485, 527
SatI	GCNGC	4 cut(s)	152, 155, 587, 633
Sau3AI	GATC	5 cut(s)	198, 312, 337, 393, 397
Sau96I	GGNCC	2 cut(s)	623, 720
ScrFI	CCNGG	2 cut(s)	82, 278
SfaNI	GCATC	1 cut(s)	353
SfoI	GGCGCC	1 cut(s)	79
SinI	GGWCC	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	6 cut(s)	252, 303, 501, 519, 595, 617
SsiI	CCGC	2 cut(s)	328, 633
SspDI	GGCGCC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	80, 276
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	1 cut(s)	743
TaqI	TCGA	2 cut(s)	396, 400
TasI	AATT	6 cut(s)	252, 303, 501, 519, 595, 617
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	4 cut(s)	224, 368, 533, 613
Tru1I	TTAA	3 cut(s)	317, 485, 527
Tru9I	TTAA	3 cut(s)	317, 485, 527
TseI	GCWGC	3 cut(s)	151, 154, 586
TspDTI	ATGAA	4 cut(s)	134, 513, 546, 572
TspGWI	ACGGA	2 cut(s)	380, 536
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	2 cut(s)	303, 519
XmnI	GAANNNNTTC	3 cut(s)	125, 304, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.