Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000019.1

Orthogroup ID

OG0031032

Physical Location & Seq

Genomic Coordinates Reverse (-)

106325 .. 107463

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggatccaaacccatccagcttccccatcctctcctactccatggaccgcctttccaccgtaggatccaagtccgccattggcaacatctccgacctcgagtccgttcaaatcaatgatggccagggaaaattcccaagatcagaatcaagcataaccccgcatcacctccaccaccttcgttctcagcggcctccgacgatccactggcagcctcttcatcatcgggtgatggccgaaagtaacccacgcaccgccgccgtaagcacccaaaatcttctttgggcacccacaacccctgctttcttctccgagcctctcgcccatctttccacaactaaaacgacaaggtctcctttgccattcacgcttccttcgccgcctccggctacaagttactcaccttttcctcaactggttcaggaagtgggtattgagaaatggaacgagctggagaacgagtactcgttcgtgcatttgaacccggaaaagggttcgaagatggttctggtgaagtgtcttgtgattgatggaacattgagcttcgatgctttggctgagggggcttctcagaatgttcactggttagtgattatgtgcaagaaaatgagggcagtaattactcatcatagtttaagaacttggacatcactctctgttagtgagagtgatatggaagttggtggcttgggtgaagaccctgatcatgatgaactctcgttttcactctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

244

Amino Acids

27.03

Weight (kDa)

5.98

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031032)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000019.1_g000020
rosa_roxburghii	Rroxscaffold_5G00359860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	286
AciI	CCGC	7 cut(s)	49, 75, 161, 190, 255, 258, 380
AclWI	GGATC	4 cut(s)	12, 60, 73, 196
AcoI	YGGCCR	2 cut(s)	121, 234
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	490, 491
AgsI	TTSAA	2 cut(s)	110, 481
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	21, 451, 543
AluI	AGCT	3 cut(s)	21, 451, 543
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	4 cut(s)	12, 60, 73, 196
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	121, 191, 234
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	5 cut(s)	158, 241, 393, 523, 704
AsuII	TTCGAA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	123
BamHI	GGATCC	2 cut(s)	4, 65
BanI	GGYRCC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	702
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	7 cut(s)	22, 35, 113, 226, 333, 496, 524
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	703
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	357
BisI	GCNGC	4 cut(s)	191, 212, 258, 380
BlsI	GCNGC	4 cut(s)	192, 213, 259, 381
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	125, 485
Bme18I	GGWCC	1 cut(s)	46
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	3 cut(s)	6, 67, 288
BmrFI	CCNGG	2 cut(s)	125, 485
BmsI	GCATC	2 cut(s)	172, 538
BpiI	GAAGAC	1 cut(s)	702
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	42, 124
BsaXI	ACNNNNNCTCC	4 cut(s)	337, 367, 446, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 491
Bse1I	ACTGG	3 cut(s)	212, 420, 587
Bse8I	GATNNNNATC	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	42, 124
BseGI	GGATG	2 cut(s)	14, 27
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	490, 491
BseMII	CTCAG	3 cut(s)	200, 549, 584
BseNI	ACTGG	3 cut(s)	212, 420, 587
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	3 cut(s)	123, 193, 236
BshNI	GGYRCC	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	386, 485
BslI	CCNNNNNNNGG	2 cut(s)	490, 491
BsmAI	GTCTC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	123, 193, 236
Bso31I	GGTCTC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	5 cut(s)	4, 65, 140, 201, 703
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	7 cut(s)	49, 75, 161, 190, 255, 258, 380
BspANI	GGCC	3 cut(s)	123, 193, 236
BspCNI	CTCAG	3 cut(s)	199, 550, 583
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	6, 67, 288
BspPI	GGATC	4 cut(s)	12, 60, 73, 196
BspT104I	TTCGAA	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	357
BsrI	ACTGG	3 cut(s)	212, 420, 587
BssECI	CCNNGG	2 cut(s)	42, 124
BssMI	GATC	5 cut(s)	4, 65, 140, 201, 703
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	497
BstDEI	CTNAG	3 cut(s)	186, 558, 570
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	14, 27
BstKTI	GATC	5 cut(s)	7, 68, 143, 204, 706
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	5 cut(s)	4, 65, 140, 201, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 376, 563
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	123, 483
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	702
BstX2I	RGATCY	2 cut(s)	4, 65
BstYI	RGATCY	2 cut(s)	4, 65
BsuRI	GGCC	3 cut(s)	123, 193, 236
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	14, 27
BtsIMutI	CAGTG	2 cut(s)	205, 580
CciI	TCATGA	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	2 cut(s)	43, 707
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	3 cut(s)	186, 558, 570
DpnI	GATC	5 cut(s)	6, 67, 142, 203, 705
DpnII	GATC	5 cut(s)	4, 65, 140, 201, 703
DriI	GACNNNNNGTC	1 cut(s)	100
EaeI	YGGCCR	2 cut(s)	121, 234
Eam1104I	CTCTTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	2 cut(s)	46, 710
FaiI	YATR	7 cut(s)	44, 155, 596, 630, 674, 708, 733
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FatI	CATG	2 cut(s)	42, 706
FauI	CCCGC	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	703
Fnu4HI	GCNGC	4 cut(s)	191, 212, 258, 380
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	4 cut(s)	191, 212, 258, 380
GluI	GCNGC	4 cut(s)	191, 212, 258, 380
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	3 cut(s)	123, 193, 236
HapII	CCGG	2 cut(s)	386, 485
Hin1II	CATG	2 cut(s)	46, 710
HinfI	GANTC	2 cut(s)	101, 146
HpaII	CCGG	2 cut(s)	386, 485
HphI	GGTGA	5 cut(s)	158, 241, 393, 523, 704
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	5 cut(s)	94, 145, 198, 313, 573
Hpy188III	TCNNGA	2 cut(s)	422, 707
Hpy8I	GTNNAC	1 cut(s)	580
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	188, 384
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	475, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 376, 563
HpyF3I	CTNAG	3 cut(s)	186, 558, 570
Hsp92II	CATG	2 cut(s)	46, 710
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	5 cut(s)	4, 65, 140, 201, 703
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	172, 538
MaeIII	GTNAC	2 cut(s)	242, 395
MalI	GATC	5 cut(s)	6, 67, 142, 203, 705
MboI	GATC	5 cut(s)	4, 65, 140, 201, 703
MboII	GAAGA	5 cut(s)	209, 269, 298, 511, 707
MflI	RGATCY	2 cut(s)	4, 65
MhlI	GDGCHC	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	2 cut(s)	131, 618
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	2 cut(s)	117, 221
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	2 cut(s)	386, 485
MspR9I	CCNGG	2 cut(s)	125, 485
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	367, 376, 563
NciI	CCSGG	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	5 cut(s)	4, 65, 140, 201, 703
NlaIII	CATG	2 cut(s)	46, 710
NlaIV	GGNNCC	3 cut(s)	6, 67, 288
NspV	TTCGAA	1 cut(s)	497
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	706
PfeI	GAWTC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	192, 213, 259, 381
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	3 cut(s)	6, 67, 288
PspPI	GGNCC	1 cut(s)	46
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	4, 65
PsyI	GACNNNGTC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	4 cut(s)	191, 212, 258, 380
Sau3AI	GATC	5 cut(s)	4, 65, 140, 201, 703
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	125, 485
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	8 cut(s)	23, 99, 171, 180, 353, 406, 453, 545
SfaNI	GCATC	2 cut(s)	172, 538
Sfr274I	CTCGAG	1 cut(s)	98
SfuI	TTCGAA	1 cut(s)	497
SinI	GGWCC	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	131, 618
SsiI	CCGC	7 cut(s)	49, 75, 161, 190, 255, 258, 380
StyD4I	CCNGG	2 cut(s)	123, 483
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	3 cut(s)	99, 497, 546
TasI	AATT	2 cut(s)	131, 618
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	3 cut(s)	193, 260, 382
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TscAI	CASTG	2 cut(s)	212, 587
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	209, 726
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	2 cut(s)	212, 587
Tth111I	GACNNNGTC	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	98
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.