Rmu_sc0000046.1_g000028

Belongs to the SKP1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000046.1
Physical Location & Seq
Reverse (-)
151326 .. 151541
216 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
atgtccttcctcatcaacaacagacttaattgcccgagatgcaccaacaactacatggatttcaaagaagacgagaacgaccttgtgcttccggtggaaagggtgaaatccaaaaccctagcaatggtgatagagtggtgcgagaatcacgccccccggcatggcaaatgcaccaccccggaagaactcaaagcatgggatgttgaattcatctag
Functional Annotation

Protein Analysis

71

Amino Acids

8.38

Weight (kDa)

5.26

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025470)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000046.1_g000028
rosa_roxburghii Rroxscaffold_4G00293860
rosa_samantha Rh1BG272900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 124, 161
AgsI TTSAA 2 cut(s) 64, 206
Ama87I CYCGRG 1 cut(s) 34
ApoI RAATTY 1 cut(s) 206
AsuC2I CCSGG 2 cut(s) 157, 179
AsuHPI GGTGA 2 cut(s) 115, 139
AvaI CYCGRG 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 75
BcnI CCSGG 2 cut(s) 157, 179
BfaI CTAG 2 cut(s) 119, 214
Bme1390I CCNGG 2 cut(s) 157, 179
BmeT110I CYCGRG 1 cut(s) 34
BmrFI CCNGG 2 cut(s) 157, 179
BmsI GCATC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 75
BpuMI CCSGG 2 cut(s) 157, 179
BsaJI CCNNGG 2 cut(s) 155, 177
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 161
Bse3DI GCAATG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 155, 177
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 124, 161
BseMI GCAATG 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 3 cut(s) 92, 157, 179
BslI CCNNNNNNNGG 2 cut(s) 124, 161
BsoBI CYCGRG 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 155, 177
BstF5I GGATG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 155, 177
BstV2I GAAGAC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 205
CviAII CATG 3 cut(s) 55, 161, 195
Eco88I CYCGRG 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 206
FaeI CATG 3 cut(s) 58, 164, 198
FaiI YATR 3 cut(s) 56, 162, 196
FatI CATG 3 cut(s) 54, 160, 194
FokI GGATG 1 cut(s) 212
FspBI CTAG 2 cut(s) 119, 214
HapII CCGG 3 cut(s) 92, 157, 179
Hin1II CATG 3 cut(s) 58, 164, 198
HinfI GANTC 1 cut(s) 145
HpaII CCGG 3 cut(s) 92, 157, 179
HphI GGTGA 2 cut(s) 115, 139
HpyAV CCTTC 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 42, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
Hsp92II CATG 3 cut(s) 58, 164, 198
LpnPI CCDG 3 cut(s) 105, 170, 192
LweI GCATC 1 cut(s) 29
MaeI CTAG 2 cut(s) 119, 214
MboII GAAGA 2 cut(s) 80, 194
MluCI AATT 2 cut(s) 28, 206
MnlI CCTC 1 cut(s) 20
MseI TTAA 1 cut(s) 27
MspI CCGG 3 cut(s) 92, 157, 179
MspR9I CCNGG 2 cut(s) 157, 179
MwoI GCNNNNNNNGC 1 cut(s) 39
NciI CCSGG 2 cut(s) 157, 179
NlaIII CATG 3 cut(s) 58, 164, 198
PfeI GAWTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 157, 179
SetI ASST 1 cut(s) 84
SfaNI GCATC 1 cut(s) 29
Sse9I AATT 2 cut(s) 28, 206
SspMI CTAG 2 cut(s) 119, 214
StyD4I CCNGG 2 cut(s) 155, 177
TasI AATT 2 cut(s) 28, 206
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 199
XapI RAATTY 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XspI CTAG 2 cut(s) 119, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.