Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000079.1

Orthogroup ID

OG0031036

Physical Location & Seq

Genomic Coordinates Forward (+)

323939 .. 327138

Gene Structure 3200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgaatcccaatatttttacttacaatactttgatggatggcttatgtttggtgggtaatcttgatgaagaaagagagctatttcattctatctcaactagggggagtgaacctggtgcaataagctactctgtgttaatcaacggctactgcaagtatagcaagatacaggaagccatcaatctttatgaggaaatgattttcaaaggaggcagattccaaagagaaagtctagattcaaagatcccaaagagaaagtgtagattcaaagatcggggactggaaacagagaacaagtctgacagttgcaacaactcttcaatcgccaccatggttgaagtagatcaaaggagatctgagggaggaacatcctgtagtgtgtgccccaataattcatgcgccgggcctaatgggacgcgtctggccgctagtgtaaacaacattagctttgtaaaccctagcattgacatactacaagcttactattaccatgtcaacggggtatttggaactcggtttccagatttcccgcctttgctgtttaactttacagcgcagtacttgccgctgtaccttcagaccccgaaacgagggacagaggtgcaggtactggagtacaacgcgaccgtggagcttgtgtttcaggggactaatttggtggcaggggatgaccatccaatgcatcttcatggttacagtttctatgtggttggattggggcttgggaactttgacaaggataaggaccctttgaaatacaatcttgttgatcctcctcttcaaaacaccattgctgtccctgtaaatgggtggacgaccatcagattcaaggctgacaatcctggagtttggtttatgcattgccatctggataggcatatgtcatggggcttggatacgacattcatagtgaaaaatggaaagggacctgaaggtcaaatcttacctccaccaccagatatgccaccttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

324

Amino Acids

36.25

Weight (kDa)

5.91

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	2 - 23	1.3e-07	PPR repeat
PPR_2	PF13041	3 - 52	2.6e-12	PPR repeat family
PPR_1	PF12854	34 - 66	3.5e-07	PPR repeat
PPR_2	PF13041	38 - 70	8.2e-07	PPR repeat family
PPR	PF01535	41 - 70	5e-07	PPR repeat
Cu-oxidase_2	PF07731	175 - 307	1e-40	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031036)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000079.1_g000071
rosa_samantha	Rh2DG343700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	933
Acc36I	ACCTGC	1 cut(s)	595
AccII	CGCG	2 cut(s)	418, 623
AciI	CCGC	3 cut(s)	426, 530, 566
AclWI	GGATC	2 cut(s)	238, 764
AcoI	YGGCCR	1 cut(s)	423
AcuI	CTGAAG	2 cut(s)	560, 951
AfaI	GTAC	4 cut(s)	560, 572, 609, 617
AfiI	CCNNNNNNNGG	2 cut(s)	590, 806
AflIII	ACRYGT	1 cut(s)	416
AgsI	TTSAA	8 cut(s)	205, 240, 268, 321, 338, 754, 782, 829
AjnI	CCWGG	2 cut(s)	112, 841
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	5 cut(s)	79, 126, 447, 479, 634
AluI	AGCT	5 cut(s)	79, 126, 447, 479, 634
AlwI	GGATC	2 cut(s)	238, 764
AlwNI	CAGNNNCTG	1 cut(s)	610
AoxI	GGCC	2 cut(s)	404, 423
ArsI	GACNNNNNNTTYG	2 cut(s)	214, 246
AspLEI	GCGC	2 cut(s)	401, 556
AspS9I	GGNCC	3 cut(s)	404, 745, 926
AsuC2I	CCSGG	1 cut(s)	403
AvaII	GGWCC	2 cut(s)	745, 926
BaeGI	GKGCMC	1 cut(s)	386
BaeI	ACNNNNGTAYC	2 cut(s)	599, 632
BccI	CCATC	6 cut(s)	28, 32, 185, 681, 827, 873
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	114, 843
BciVI	GTATCC	1 cut(s)	889
BcnI	CCSGG	1 cut(s)	403
BfaI	CTAG	4 cut(s)	99, 233, 429, 459
BfmI	CTRYAG	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	595
BfuI	GTATCC	1 cut(s)	889
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	2 cut(s)	426, 566
BlsI	GCNGC	2 cut(s)	427, 567
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	3 cut(s)	114, 403, 843
Bme18I	GGWCC	2 cut(s)	745, 926
BmgT120I	GGNCC	3 cut(s)	404, 745, 926
BmiI	GGNNCC	2 cut(s)	747, 927
BmrFI	CCNGG	3 cut(s)	114, 403, 843
BmsI	GCATC	1 cut(s)	691
BpmI	CTGGAG	2 cut(s)	632, 864
BpuMI	CCSGG	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	330, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 806
Bse1I	ACTGG	2 cut(s)	285, 615
Bse3DI	GCAATG	2 cut(s)	789, 859
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	2 cut(s)	114, 843
BseDI	CCNNGG	2 cut(s)	330, 627
BseGI	GGATG	4 cut(s)	43, 368, 673, 673
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	2 cut(s)	590, 806
BseMI	GCAATG	2 cut(s)	789, 859
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	285, 615
BseRI	GAGGAG	1 cut(s)	765
BseSI	GKGCMC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	2 cut(s)	418, 623
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	406, 425
BsiEI	CGRYCG	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	6 cut(s)	291, 427, 607, 661, 782, 939
BslI	CCNNNNNNNGG	2 cut(s)	590, 806
BsmFI	GGGAC	6 cut(s)	291, 427, 607, 661, 782, 939
BsnI	GGCC	2 cut(s)	406, 425
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	5 cut(s)	243, 271, 343, 353, 769
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	3 cut(s)	426, 530, 566
BspANI	GGCC	2 cut(s)	406, 425
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	2 cut(s)	418, 623
BspLI	GGNNCC	2 cut(s)	747, 927
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	2 cut(s)	238, 764
BsrDI	GCAATG	2 cut(s)	789, 859
BsrI	ACTGG	2 cut(s)	285, 615
BssECI	CCNNGG	2 cut(s)	330, 627
BssMI	GATC	5 cut(s)	243, 271, 343, 353, 769
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	114, 843
Bst4CI	ACNGT	3 cut(s)	305, 628, 698
Bst6I	CTCTTC	2 cut(s)	322, 783
BstAPI	GCANNNNNTGC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	2 cut(s)	330, 627
BstF5I	GGATG	4 cut(s)	43, 368, 673, 673
BstFNI	CGCG	2 cut(s)	418, 623
BstHHI	GCGC	2 cut(s)	401, 556
BstKTI	GATC	5 cut(s)	246, 274, 346, 356, 772
BstMBI	GATC	5 cut(s)	243, 271, 343, 353, 769
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 562
BstNI	CCWGG	2 cut(s)	114, 843
BstSCI	CCNGG	3 cut(s)	112, 401, 841
BstSFI	CTRYAG	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	2 cut(s)	418, 623
BstX2I	RGATCY	2 cut(s)	243, 353
BstYI	RGATCY	2 cut(s)	243, 353
BsuI	GTATCC	1 cut(s)	889
BsuRI	GGCC	2 cut(s)	406, 425
BtgI	CCRYGG	2 cut(s)	330, 627
BtsCI	GGATG	4 cut(s)	43, 368, 673, 673
BveI	ACCTGC	1 cut(s)	595
CaiI	CAGNNNCTG	1 cut(s)	610
CfoI	GCGC	2 cut(s)	401, 556
Cfr13I	GGNCC	3 cut(s)	404, 745, 926
CseI	GACGC	2 cut(s)	407, 424
CsiI	ACCWGGT	1 cut(s)	112
Csp6I	GTAC	4 cut(s)	559, 571, 608, 616
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	5 cut(s)	331, 396, 491, 689, 885
CviQI	GTAC	4 cut(s)	559, 571, 608, 616
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	5 cut(s)	245, 273, 345, 355, 771
DpnII	GATC	5 cut(s)	243, 271, 343, 353, 769
DrdI	GACNNNNNNGTC	1 cut(s)	933
DseDI	GACNNNNNNGTC	1 cut(s)	933
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	322, 783
EarI	CTCTTC	2 cut(s)	322, 783
Eco130I	CCWWGG	1 cut(s)	330
Eco47I	GGWCC	2 cut(s)	745, 926
Eco57I	CTGAAG	2 cut(s)	560, 951
EcoO109I	RGGNCCY	2 cut(s)	745, 926
EcoRII	CCWGG	2 cut(s)	112, 841
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	2 cut(s)	684, 861
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	5 cut(s)	334, 399, 494, 692, 888
FaqI	GGGAC	6 cut(s)	291, 427, 607, 661, 782, 939
FatI	CATG	5 cut(s)	330, 395, 490, 688, 884
FauI	CCCGC	1 cut(s)	537
FauNDI	CATATG	1 cut(s)	879
Fnu4HI	GCNGC	2 cut(s)	426, 566
FokI	GGATG	4 cut(s)	50, 355, 660, 680
Fsp4HI	GCNGC	2 cut(s)	426, 566
FspBI	CTAG	4 cut(s)	99, 233, 429, 459
GlaI	GCGC	2 cut(s)	400, 555
GluI	GCNGC	2 cut(s)	426, 566
GsuI	CTGGAG	2 cut(s)	632, 864
HaeIII	GGCC	2 cut(s)	406, 425
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	2 cut(s)	407, 424
HhaI	GCGC	2 cut(s)	401, 556
Hin1II	CATG	5 cut(s)	334, 399, 494, 692, 888
Hin6I	GCGC	2 cut(s)	399, 554
HinP1I	GCGC	2 cut(s)	399, 554
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	5 cut(s)	4, 216, 236, 264, 825
HpaII	CCGG	1 cut(s)	402
Hpy166II	GTNNAC	5 cut(s)	110, 436, 454, 496, 813
Hpy188I	TCNGA	4 cut(s)	301, 358, 579, 824
Hpy188III	TCNNGA	4 cut(s)	62, 233, 521, 869
Hpy8I	GTNNAC	5 cut(s)	110, 436, 454, 496, 813
HpyAV	CCTTC	2 cut(s)	584, 926
HpyCH4III	ACNGT	3 cut(s)	305, 628, 698
HpyCH4V	TGCA	6 cut(s)	119, 153, 309, 604, 682, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 562
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	334, 399, 494, 692, 888
HspAI	GCGC	2 cut(s)	399, 554
Kzo9I	GATC	5 cut(s)	243, 271, 343, 353, 769
LmnI	GCTCC	1 cut(s)	631
LweI	GCATC	1 cut(s)	691
MabI	ACCWGGT	1 cut(s)	112
MaeI	CTAG	4 cut(s)	99, 233, 429, 459
MaeIII	GTNAC	1 cut(s)	692
MalI	GATC	5 cut(s)	245, 273, 345, 355, 771
MboI	GATC	5 cut(s)	243, 271, 343, 353, 769
MboII	GAAGA	4 cut(s)	80, 309, 677, 770
MflI	RGATCY	2 cut(s)	243, 353
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	2 cut(s)	391, 652
MluI	ACGCGT	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	691
MnlI	CCTC	9 cut(s)	184, 203, 352, 356, 584, 592, 783, 786, 957
Mph1103I	ATGCAT	2 cut(s)	684, 861
MseI	TTAA	2 cut(s)	137, 543
MslI	CAYNNNNRTG	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	568
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	3 cut(s)	114, 403, 843
MvaI	CCWGG	2 cut(s)	114, 843
MvnI	CGCG	2 cut(s)	418, 623
MwoI	GCNNNNNNNGC	2 cut(s)	159, 562
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	330
NdeI	CATATG	1 cut(s)	879
NdeII	GATC	5 cut(s)	243, 271, 343, 353, 769
NlaIII	CATG	5 cut(s)	334, 399, 494, 692, 888
NlaIV	GGNNCC	2 cut(s)	747, 927
NsiI	ATGCAT	2 cut(s)	684, 861
PfeI	GAWTC	5 cut(s)	4, 216, 236, 264, 825
PfoI	TCCNGGA	1 cut(s)	841
PkrI	GCNGC	2 cut(s)	427, 567
PpuMI	RGGWCCY	2 cut(s)	745, 926
Psp5II	RGGWCCY	2 cut(s)	745, 926
Psp6I	CCWGG	2 cut(s)	112, 841
PspGI	CCWGG	2 cut(s)	112, 841
PspN4I	GGNNCC	2 cut(s)	747, 927
PspPI	GGNCC	3 cut(s)	404, 745, 926
PspPPI	RGGWCCY	2 cut(s)	745, 926
PstNI	CAGNNNCTG	1 cut(s)	610
PsuI	RGATCY	2 cut(s)	243, 353
RsaI	GTAC	4 cut(s)	560, 572, 609, 617
RsaNI	GTAC	4 cut(s)	559, 571, 608, 616
RseI	CAYNNNNRTG	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	137, 543
SatI	GCNGC	2 cut(s)	426, 566
Sau3AI	GATC	5 cut(s)	243, 271, 343, 353, 769
Sau96I	GGNCC	3 cut(s)	404, 745, 926
ScaI	AGTACT	1 cut(s)	560
ScrFI	CCNGG	3 cut(s)	114, 403, 843
SduI	GDGCHC	1 cut(s)	386
SexAI	ACCWGGT	1 cut(s)	112
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	373
SinI	GGWCC	2 cut(s)	745, 926
SmiMI	CAYNNNNRTG	1 cut(s)	687
Sse9I	AATT	2 cut(s)	391, 652
SsiI	CCGC	3 cut(s)	426, 530, 566
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	4 cut(s)	99, 233, 429, 459
StyD4I	CCNGG	3 cut(s)	112, 401, 841
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	305, 628, 698
TasI	AATT	2 cut(s)	391, 652
TatI	WGTACW	2 cut(s)	558, 615
TauI	GCSGC	2 cut(s)	428, 568
TfiI	GAWTC	5 cut(s)	4, 216, 236, 264, 825
Tru1I	TTAA	2 cut(s)	137, 543
Tru9I	TTAA	2 cut(s)	137, 543
TspDTI	ATGAA	6 cut(s)	17, 74, 81, 384, 677, 895
VpaK11BI	GGWCC	2 cut(s)	745, 926
XbaI	TCTAGA	1 cut(s)	232
XspI	CTAG	4 cut(s)	99, 233, 429, 459
ZrmI	AGTACT	1 cut(s)	560
Zsp2I	ATGCAT	2 cut(s)	684, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.