Rh2DG343700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0031036
Physical Location & Seq
Reverse (-)
45163101 .. 45165384
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG343700.1

Sequence Viewer

Length: 513 bp
ATGATAGATAGCGGTATCCATCCTGATTTGGTAACATTCAATGTGTTAATAGGGGCACTTTGCAGAAGGGGAAATGTGAAAGATAGCCGTGACTTGCTAAAGTTGATGATTCGAAGAGGCATGAATCCCAATATTTTTACTTACAATACTTTGATGGATGGCTTATGTTTGGTGGGTAATCTTGATGAAGAAAGAGAGCTATTTCATTCTATCTCAACTAGGGGGAGTGAACCTGGTGCAATAAGCTACTCTGTGTTAATCAACGGCTACTGCAAGTATAGCAAGATACAGGAAGCCATCAATCTTTATGAGGAAATGATTTTCAAAGGAGGCAGATTCCAAAGAGAAAGTCTAGATTCAGAGATCCCAAAGAGAAAGTGTAGATTCAAAGATCGGGGACAGGAAACAGAGAACAAGGTATATTTAAGAGATCGAATTGGCAGTGAATCGAACCAAAAAAGGCATCGGTTGACTTACAACATTGCCGAGACCGACGACGTTGAAGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.62

Weight (kDa)

6.84

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 3 - 53 1.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 5 - 36 2.3e-09 PPR repeat
PPR_2 PF13041 8 - 56 1.1e-16 PPR repeat family
PPR PF01535 11 - 41 3.9e-07 PPR repeat
PPR_3 PF13812 32 - 90 6.2e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 39 - 63 3.6e-09 PPR repeat
PPR_2 PF13041 45 - 92 2.9e-11 PPR repeat family
PPR_1 PF12854 74 - 106 1.4e-07 PPR repeat
PPR_2 PF13041 78 - 110 3.2e-07 PPR repeat family
PPR PF01535 81 - 110 2e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031036)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000079.1_g000071
rosa_samantha Rh2DG343700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 358
AgsI TTSAA 4 cut(s) 40, 325, 388, 503
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 199, 246
AluI AGCT 2 cut(s) 199, 246
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 1 cut(s) 358
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AsuII TTCGAA 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 58
BccI CCATC 4 cut(s) 27, 148, 152, 305
BceAI ACGGC 2 cut(s) 72, 280
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 2 cut(s) 219, 353
BfuI GTATCC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 472
Bpu14I TTCGAA 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 19, 163
BseMI GCAATG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 58
BslFI GGGAC 1 cut(s) 411
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 411
Bso31I GGTCTC 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 3 cut(s) 363, 391, 430
BspACI CCGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 358
BspT104I TTCGAA 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 480
BssMI GATC 3 cut(s) 363, 391, 430
Bst2UI CCWGG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 112
BstF5I GGATG 2 cut(s) 19, 163
BstKTI GATC 3 cut(s) 366, 394, 433
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 3 cut(s) 363, 391, 430
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BsuI GTATCC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 19, 163
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 1 cut(s) 448
CsiI ACCWGGT 1 cut(s) 232
CviAII CATG 1 cut(s) 121
CviJI RGCY 6 cut(s) 87, 162, 199, 246, 267, 296
CviKI_1 RGCY 6 cut(s) 87, 162, 199, 246, 267, 296
DpnI GATC 3 cut(s) 365, 393, 432
DpnII GATC 3 cut(s) 363, 391, 430
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 124
FaiI YATR 5 cut(s) 122, 166, 279, 309, 421
FaqI GGGAC 1 cut(s) 411
FatI CATG 1 cut(s) 120
FokI GGATG 2 cut(s) 6, 170
FspBI CTAG 2 cut(s) 219, 353
Hin1II CATG 1 cut(s) 124
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 6 cut(s) 109, 124, 336, 356, 384, 446
Hpy166II GTNNAC 2 cut(s) 230, 471
Hpy188I TCNGA 1 cut(s) 361
Hpy188III TCNNGA 3 cut(s) 23, 182, 353
Hpy8I GTNNAC 2 cut(s) 230, 471
Hpy99I CGWCG 2 cut(s) 497, 500
HpyAV CCTTC 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 3 cut(s) 63, 239, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 3 cut(s) 363, 391, 430
LpnPI CCDG 5 cut(s) 36, 219, 246, 275, 386
LweI GCATC 1 cut(s) 472
MabI ACCWGGT 1 cut(s) 232
MaeI CTAG 2 cut(s) 219, 353
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 31, 89
MalI GATC 3 cut(s) 365, 393, 432
MboI GATC 3 cut(s) 363, 391, 430
MboII GAAGA 2 cut(s) 126, 200
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 1 cut(s) 435
MnlI CCTC 3 cut(s) 110, 304, 323
MseI TTAA 3 cut(s) 47, 257, 425
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 279
NdeII GATC 3 cut(s) 363, 391, 430
NlaIII CATG 1 cut(s) 124
NmeAIII GCCGAG 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 89
NspV TTCGAA 1 cut(s) 112
PfeI GAWTC 6 cut(s) 109, 124, 336, 356, 384, 446
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 363
SaqAI TTAA 3 cut(s) 47, 257, 425
Sau3AI GATC 3 cut(s) 363, 391, 430
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 58
SetI ASST 5 cut(s) 201, 235, 248, 420, 501
SexAI ACCWGGT 1 cut(s) 232
SfaNI GCATC 1 cut(s) 472
SfuI TTCGAA 1 cut(s) 112
Sse9I AATT 1 cut(s) 435
SsiI CCGC 1 cut(s) 12
SspI AATATT 1 cut(s) 133
SspMI CTAG 2 cut(s) 219, 353
StyD4I CCNGG 1 cut(s) 232
TaiI ACGT 1 cut(s) 501
TaqI TCGA 3 cut(s) 112, 433, 449
TaqII GACCGA 1 cut(s) 506
TasI AATT 1 cut(s) 435
TfiI GAWTC 6 cut(s) 109, 124, 336, 356, 384, 446
Tru1I TTAA 3 cut(s) 47, 257, 425
Tru9I TTAA 3 cut(s) 47, 257, 425
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 137, 194, 201
TspRI CASTG 1 cut(s) 448
XbaI TCTAGA 1 cut(s) 352
XspI CTAG 2 cut(s) 219, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.