Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000129.1

Orthogroup ID

OG0025339

Physical Location & Seq

Genomic Coordinates Forward (+)

54093 .. 54344

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

atggccgcttcaggcggttataattaccgagatgccactactcagaggagctctttcaaggtggataggcgtctttctgtcaattccaatcccaagtcttctgtaaagtccaagcctttgctgcctcatcgctggaacagcactggctctattggtggtggtgctactggagcttcctctaaggataatataggagttcctggaagagtccgagtagctgtaagattgtggccacgtaactttgtttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

83

Amino Acids

8.93

Weight (kDa)

11.51

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025339)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017016
rosa_multiflora	Rmu_sc0000129.1_g000011 Rmu_sc0001355.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AciI	CCGC	2 cut(s)	6, 15
AcoI	YGGCCR	2 cut(s)	3, 230
AcyI	GRCGYC	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	3 cut(s)	51, 173, 218
AluI	AGCT	3 cut(s)	51, 173, 218
Alw21I	GWGCWC	1 cut(s)	53
AoxI	GGCC	2 cut(s)	3, 230
ApeKI	GCWGC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	6, 122
BlsI	GCNGC	2 cut(s)	7, 123
Bme1390I	CCNGG	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	148, 172
BseBI	CCWGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	148, 172
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	108
BshFI	GGCC	2 cut(s)	5, 232
BsiHKAI	GWGCWC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	5, 232
Bsp1286I	GDGCHC	1 cut(s)	53
BspACI	CCGC	2 cut(s)	6, 15
BspANI	GGCC	2 cut(s)	5, 232
BspCNI	CTCAG	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	148, 172
BssNI	GRCGYC	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	42, 180
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 138, 170
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	5, 232
BtgZI	GCGATG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	141
CseI	GACGC	1 cut(s)	59
CviJI	RGCY	7 cut(s)	5, 51, 115, 147, 173, 218, 232
CviKI_1	RGCY	7 cut(s)	5, 51, 115, 147, 173, 218, 232
DdeI	CTNAG	2 cut(s)	42, 180
EaeI	YGGCCR	2 cut(s)	3, 230
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	53
FaiI	YATR	2 cut(s)	21, 191
Fnu4HI	GCNGC	2 cut(s)	6, 122
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	6, 122
GluI	GCNGC	2 cut(s)	6, 122
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	5, 232
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	207
Hpy188I	TCNGA	2 cut(s)	45, 212
HpyCH4IV	ACGT	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 138, 170
HpyF3I	CTNAG	2 cut(s)	42, 180
HpySE526I	ACGT	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	70
LmnI	GCTCC	2 cut(s)	48, 170
LpnPI	CCDG	5 cut(s)	118, 129, 153, 186, 213
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	236
MboII	GAAGA	2 cut(s)	90, 216
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	2 cut(s)	22, 82
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	3 cut(s)	39, 135, 187
Mox20I	TGGCCA	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	232
Msp20I	TGGCCA	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	121, 138, 170
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	7, 123
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Ppu21I	YACGTR	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	2 cut(s)	6, 122
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	5 cut(s)	53, 63, 175, 220, 238
SfaNI	GCATC	1 cut(s)	22
Sse9I	AATT	2 cut(s)	22, 82
SsiI	CCGC	2 cut(s)	6, 15
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	199
TaiI	ACGT	1 cut(s)	238
TasI	AATT	2 cut(s)	22, 82
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	1 cut(s)	121
TspRI	CASTG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.