Rmu_sc0000144.1_g000044

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
OG0031044
Physical Location & Seq
Forward (+)
187667 .. 190476
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
atgtcgtccgagaagaagatcataaccctgaagagctccgacaacgagaccttcgaggtcgacgaggcggtggccgtggaatcgcagctcatcaagtacatggtggaggacggctgcgccgacggtgtgatccccgtgcccaacgtcaccggcgccatcctaaccaaggcgatcgagtactgcaggaagaaagttgagttgggcggcaaagatgccgaggaggacaagtccggcgactcgccgttgaaggcttttgactccgaatttgtcaagttcaacaagaacgtcctgctcgagctcaccttggctgccgactttctgaacatcaagggccttctggatctgacttggcagactctgggtctggcaggcatgattaaggggaaggttcatgaagacatctgcgagctcttcagtctgatagaagaggaggaggttcggaggcagagccagtgggcagatgcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

155

Amino Acids

17.16

Weight (kDa)

4.54

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 65 4.3e-23 Skp1 family, tetramerisation domain
Skp1 PF01466 110 - 153 1.1e-06 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031044)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000144.1_g000044
rosa_samantha Rh7DG371000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 60
AciI CCGC 2 cut(s) 68, 204
AclWI GGATC 2 cut(s) 124, 348
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 2 cut(s) 50, 397
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 98, 179
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 2 cut(s) 247, 277
AhdI GACNNNNNGTC 1 cut(s) 360
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 4 cut(s) 36, 88, 298, 409
AluI AGCT 4 cut(s) 36, 88, 298, 409
Alw21I GWGCWC 3 cut(s) 38, 300, 411
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 124, 348
AlwNI CAGNNNCTG 1 cut(s) 358
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 2 cut(s) 72, 331
ApeKI GCWGC 3 cut(s) 85, 114, 308
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 2 cut(s) 119, 155
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 139, 292
AvaI CYCGRG 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 3 cut(s) 38, 300, 411
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 3 cut(s) 38, 300, 411
BbvI GCAGC 3 cut(s) 97, 101, 295
BccI CCATC 1 cut(s) 164
BceAI ACGGC 3 cut(s) 59, 127, 226
BcoDI GTCTC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 4 cut(s) 86, 115, 205, 309
BlsI GCNGC 4 cut(s) 87, 116, 206, 310
BmcAI AGTACT 1 cut(s) 179
BmeRI GACNNNNNGTC 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 2 cut(s) 202, 451
BpiI GAAGAC 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 4 cut(s) 75, 165, 216, 303
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 451
BseDI CCNNGG 4 cut(s) 75, 165, 216, 303
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 3 cut(s) 233, 443, 446
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 3 cut(s) 97, 101, 295
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 74, 333
BshNI GGYRCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 3 cut(s) 38, 300, 411
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 2 cut(s) 150, 231
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 2 cut(s) 74, 333
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 4 cut(s) 38, 141, 300, 411
Bsp143I GATC 4 cut(s) 18, 129, 171, 340
BspACI CCGC 2 cut(s) 68, 204
BspANI GGCC 2 cut(s) 74, 333
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 185
BspPI GGATC 2 cut(s) 124, 348
BspQI GCTCTTC 2 cut(s) 26, 416
BspT107I GGYRCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 75, 165, 216, 303
BssMI GATC 4 cut(s) 18, 129, 171, 340
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 165, 303
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 3 cut(s) 26, 416, 420
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 370, 407
BstDSI CCRYGG 1 cut(s) 75
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 2 cut(s) 119, 155
BstKTI GATC 4 cut(s) 21, 132, 174, 343
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 4 cut(s) 18, 129, 171, 340
BstMCI CGRYCG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 3 cut(s) 97, 101, 295
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 2 cut(s) 74, 333
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 370, 407
CaiI CAGNNNCTG 1 cut(s) 358
CciI TCATGA 1 cut(s) 391
CfoI GCGC 2 cut(s) 119, 155
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 331
Csp6I GTAC 2 cut(s) 97, 178
CviAII CATG 3 cut(s) 100, 373, 392
CviQI GTAC 2 cut(s) 97, 178
DinI GGCGCC 1 cut(s) 154
DpnI GATC 4 cut(s) 20, 131, 173, 342
DpnII GATC 4 cut(s) 18, 129, 171, 340
DriI GACNNNNNGTC 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 3 cut(s) 26, 416, 420
Eam1105I GACNNNNNGTC 1 cut(s) 360
EarI CTCTTC 3 cut(s) 26, 416, 420
Ecl136II GAGCTC 3 cut(s) 36, 298, 409
Eco130I CCWWGG 2 cut(s) 165, 303
Eco24I GRGCYC 3 cut(s) 38, 300, 411
Eco31I GGTCTC 1 cut(s) 41
Eco53kI GAGCTC 3 cut(s) 36, 298, 409
Eco57I CTGAAG 2 cut(s) 50, 397
Eco88I CYCGRG 1 cut(s) 293
EcoICRI GAGCTC 3 cut(s) 36, 298, 409
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 165, 303
EcoT38I GRGCYC 3 cut(s) 38, 300, 411
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 2 cut(s) 165, 303
FaeI CATG 3 cut(s) 103, 376, 395
FaiI YATR 4 cut(s) 23, 101, 374, 393
FatI CATG 3 cut(s) 99, 372, 391
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 4 cut(s) 86, 115, 205, 309
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 3 cut(s) 38, 300, 411
Fsp4HI GCNGC 4 cut(s) 86, 115, 205, 309
GlaI GCGC 2 cut(s) 118, 154
GluI GCNGC 4 cut(s) 86, 115, 205, 309
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 2 cut(s) 74, 333
HapII CCGG 2 cut(s) 150, 231
HhaI GCGC 2 cut(s) 119, 155
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 103, 376, 395
Hin6I GCGC 2 cut(s) 117, 153
HinP1I GCGC 2 cut(s) 117, 153
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 4 cut(s) 80, 236, 257, 355
HpaII CCGG 2 cut(s) 150, 231
HphI GGTGA 2 cut(s) 139, 292
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 7 cut(s) 10, 40, 262, 321, 345, 420, 441
Hpy188III TCNNGA 2 cut(s) 338, 392
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 2 cut(s) 65, 125
HpyAV CCTTC 4 cut(s) 61, 241, 344, 379
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 144, 285
HpyCH4V TGCA 1 cut(s) 183
HpySE526I ACGT 2 cut(s) 144, 285
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 103, 376, 395
HspAI GCGC 2 cut(s) 117, 153
KasI GGCGCC 1 cut(s) 152
Kzo9I GATC 4 cut(s) 18, 129, 171, 340
LguI GCTCTTC 2 cut(s) 26, 416
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 3 cut(s) 97, 101, 295
LweI GCATC 2 cut(s) 202, 451
MaeII ACGT 2 cut(s) 144, 285
MaeIII GTNAC 1 cut(s) 145
MalI GATC 4 cut(s) 20, 131, 173, 342
MboI GATC 4 cut(s) 18, 129, 171, 340
MboII GAAGA 7 cut(s) 25, 28, 43, 199, 403, 407, 437
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 4 cut(s) 38, 141, 300, 411
MluCI AATT 1 cut(s) 263
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 3 cut(s) 230, 251, 349
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 9 cut(s) 49, 58, 100, 211, 214, 421, 424, 427, 435
MseI TTAA 1 cut(s) 378
MspI CCGG 2 cut(s) 150, 231
NarI GGCGCC 1 cut(s) 153
NdeII GATC 4 cut(s) 18, 129, 171, 340
NlaIII CATG 3 cut(s) 103, 376, 395
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 145
PaeR7I CTCGAG 1 cut(s) 293
PagI TCATGA 1 cut(s) 391
PciSI GCTCTTC 2 cut(s) 26, 416
PcsI WCGNNNNNNNCGW 4 cut(s) 51, 60, 117, 291
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 4 cut(s) 87, 116, 206, 310
Ple19I CGATCG 1 cut(s) 174
PleI GAGTC 3 cut(s) 230, 251, 349
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 3 cut(s) 230, 251, 349
Psp124BI GAGCTC 3 cut(s) 38, 300, 411
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 331
PspXI VCTCGAGB 1 cut(s) 293
PstI CTGCAG 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 340
PvuI CGATCG 1 cut(s) 174
RsaI GTAC 2 cut(s) 98, 179
RsaNI GTAC 2 cut(s) 97, 178
SacI GAGCTC 3 cut(s) 38, 300, 411
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 2 cut(s) 26, 416
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 4 cut(s) 86, 115, 205, 309
Sau3AI GATC 4 cut(s) 18, 129, 171, 340
Sau96I GGNCC 1 cut(s) 331
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 3 cut(s) 230, 251, 349
SduI GDGCHC 4 cut(s) 38, 141, 300, 411
SfaNI GCATC 2 cut(s) 202, 451
SfcI CTRYAG 1 cut(s) 181
SfoI GGCGCC 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 293
SgrAI CRCCGGYG 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 263
SsiI CCGC 2 cut(s) 68, 204
SspDI GGCGCC 1 cut(s) 152
SstI GAGCTC 3 cut(s) 38, 300, 411
StyI CCWWGG 2 cut(s) 165, 303
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 2 cut(s) 147, 288
TaqI TCGA 4 cut(s) 54, 60, 174, 294
TasI AATT 1 cut(s) 263
TatI WGTACW 2 cut(s) 96, 177
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 458
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 3 cut(s) 85, 114, 308
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 380, 408
TspRI CASTG 1 cut(s) 458
XagI CCTNNNNNAGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 263
XhoI CTCGAG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.