Rh7DG371000

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0031044
Physical Location & Seq
Reverse (-)
50237403 .. 50238595
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG371000.1

Sequence Viewer

Length: 468 bp
ATGTCGTCGGAGAAGAAGATCATAACCCTTAAGAGCTCCGACAACGAGACCTTCGAGGTCGACGAGGCGGTGGCCGTGAAATCGCAGATCATCAAGTACATGGTGGAGGAAGGCTGCGCCGACGATTCGATCCCCTTGCCCAACGTCACCGGCGCCATCCTAGCCAAGGTGATCGAGTACTGCAAGAAGCACGTTGAGAAGGGCGGCAAAGATGCCGAGGAGGACAAGTCCGGCGACTCGCCGTTGAAGGCTTTTGACTCCGAATTCGTCAAGGTCGACAAGATCGTCCTGCTCAACCTCACCTTGGCTGCCGACTTTCTGAACATCAAGGGCCTTCTGGATCTGACTTGGCAGACTCTGGTTCTGGCAGGCATGATTAAGGGGAAGGCTCATGAAGACATCTGCGAGCTCTTCCGTCTGAAAGAAGAGGAGGAGGTTCGGAGGGAGAGCCAGTGGGCAGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

155

Amino Acids

17.32

Weight (kDa)

4.74

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 65 1.8e-26 Skp1 family, tetramerisation domain
Skp1 PF01466 110 - 153 1.2e-08 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031044)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000144.1_g000044
rosa_samantha Rh7DG371000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 152
AccI GTMKAC 2 cut(s) 60, 276
AciI CCGC 2 cut(s) 68, 204
AclWI GGATC 2 cut(s) 124, 348
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 98, 179
AfiI CCNNNNNNNGG 2 cut(s) 166, 304
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 2 cut(s) 36, 409
AluI AGCT 2 cut(s) 36, 409
Alw21I GWGCWC 2 cut(s) 38, 411
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 124, 348
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 2 cut(s) 72, 331
ApeKI GCWGC 2 cut(s) 114, 308
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 2 cut(s) 119, 155
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 3 cut(s) 139, 181, 292
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 2 cut(s) 38, 411
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 38, 411
BbvI GCAGC 2 cut(s) 101, 295
BccI CCATC 1 cut(s) 164
BceAI ACGGC 2 cut(s) 59, 226
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 29
BisI GCNGC 3 cut(s) 115, 205, 309
BlsI GCNGC 3 cut(s) 116, 206, 310
BmcAI AGTACT 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 165, 216, 303
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 437, 467
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 304
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 451
BseDI CCNNGG 3 cut(s) 165, 216, 303
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 166, 304
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 3 cut(s) 233, 443, 446
BseXI GCAGC 2 cut(s) 101, 295
BshFI GGCC 2 cut(s) 74, 333
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 2 cut(s) 38, 411
BsiSI CCGG 2 cut(s) 150, 231
BslI CCNNNNNNNGG 2 cut(s) 166, 304
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 2 cut(s) 74, 333
Bso31I GGTCTC 1 cut(s) 41
Bsp1286I GDGCHC 2 cut(s) 38, 411
Bsp143I GATC 6 cut(s) 18, 87, 129, 171, 282, 340
BspACI CCGC 2 cut(s) 68, 204
BspANI GGCC 2 cut(s) 74, 333
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 2 cut(s) 124, 348
BspQI GCTCTTC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 3 cut(s) 165, 216, 303
BssMI GATC 6 cut(s) 18, 87, 129, 171, 282, 340
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 165, 303
Bst6I CTCTTC 2 cut(s) 416, 420
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 370, 407
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 2 cut(s) 119, 155
BstKTI GATC 6 cut(s) 21, 90, 132, 174, 285, 343
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 6 cut(s) 18, 87, 129, 171, 282, 340
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 101, 295
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 2 cut(s) 74, 333
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 370, 407
CaiI CAGNNNCTG 1 cut(s) 358
CciI TCATGA 1 cut(s) 391
CfoI GCGC 2 cut(s) 119, 155
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 331
Csp6I GTAC 2 cut(s) 97, 178
CviAII CATG 3 cut(s) 100, 373, 392
CviQI GTAC 2 cut(s) 97, 178
DinI GGCGCC 1 cut(s) 154
DpnI GATC 6 cut(s) 20, 89, 131, 173, 284, 342
DpnII GATC 6 cut(s) 18, 87, 129, 171, 282, 340
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 416, 420
EarI CTCTTC 2 cut(s) 416, 420
Ecl136II GAGCTC 2 cut(s) 36, 409
Eco130I CCWWGG 2 cut(s) 165, 303
Eco24I GRGCYC 2 cut(s) 38, 411
Eco31I GGTCTC 1 cut(s) 41
Eco53kI GAGCTC 2 cut(s) 36, 409
EcoICRI GAGCTC 2 cut(s) 36, 409
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 165, 303
EcoT38I GRGCYC 2 cut(s) 38, 411
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 2 cut(s) 165, 303
FaeI CATG 3 cut(s) 103, 376, 395
FaiI YATR 4 cut(s) 23, 101, 374, 393
FatI CATG 3 cut(s) 99, 372, 391
FblI GTMKAC 2 cut(s) 60, 276
Fnu4HI GCNGC 3 cut(s) 115, 205, 309
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 2 cut(s) 38, 411
Fsp4HI GCNGC 3 cut(s) 115, 205, 309
FspBI CTAG 1 cut(s) 161
GlaI GCGC 2 cut(s) 118, 154
GluI GCNGC 3 cut(s) 115, 205, 309
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 2 cut(s) 74, 333
HapII CCGG 2 cut(s) 150, 231
HhaI GCGC 2 cut(s) 119, 155
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 103, 376, 395
Hin6I GCGC 2 cut(s) 117, 153
HinP1I GCGC 2 cut(s) 117, 153
HincII GTYRAC 2 cut(s) 61, 277
HindII GTYRAC 2 cut(s) 61, 277
HinfI GANTC 4 cut(s) 125, 236, 257, 355
HpaII CCGG 2 cut(s) 150, 231
HphI GGTGA 3 cut(s) 139, 181, 292
Hpy166II GTNNAC 2 cut(s) 61, 277
Hpy188I TCNGA 7 cut(s) 10, 40, 262, 321, 345, 420, 441
Hpy188III TCNNGA 2 cut(s) 338, 392
Hpy8I GTNNAC 2 cut(s) 61, 277
Hpy99I CGWCG 3 cut(s) 10, 65, 125
HpyAV CCTTC 6 cut(s) 61, 104, 193, 241, 344, 379
HpyCH4IV ACGT 2 cut(s) 144, 192
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpySE526I ACGT 2 cut(s) 144, 192
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 103, 376, 395
HspAI GCGC 2 cut(s) 117, 153
KasI GGCGCC 1 cut(s) 152
Kzo9I GATC 6 cut(s) 18, 87, 129, 171, 282, 340
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 8 cut(s) 163, 244, 302, 323, 344, 350, 354, 464
Lsp1109I GCAGC 2 cut(s) 101, 295
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 161
MaeII ACGT 2 cut(s) 144, 192
MaeIII GTNAC 1 cut(s) 145
MalI GATC 6 cut(s) 20, 89, 131, 173, 284, 342
MboI GATC 6 cut(s) 18, 87, 129, 171, 282, 340
MboII GAAGA 5 cut(s) 25, 28, 403, 407, 437
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 38, 411
MluCI AATT 1 cut(s) 263
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 3 cut(s) 230, 251, 349
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 2 cut(s) 30, 378
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 2 cut(s) 150, 231
MwoI GCNNNNNNNGC 1 cut(s) 161
NarI GGCGCC 1 cut(s) 153
NdeII GATC 6 cut(s) 18, 87, 129, 171, 282, 340
NlaIII CATG 3 cut(s) 103, 376, 395
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 145
PagI TCATGA 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 416
PcsI WCGNNNNNNNCGW 4 cut(s) 51, 60, 273, 282
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 3 cut(s) 116, 206, 310
PleI GAGTC 3 cut(s) 230, 251, 349
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 3 cut(s) 230, 251, 349
Psp124BI GAGCTC 2 cut(s) 38, 411
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 2 cut(s) 98, 179
RsaNI GTAC 2 cut(s) 97, 178
SacI GAGCTC 2 cut(s) 38, 411
SalI GTCGAC 2 cut(s) 59, 275
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 2 cut(s) 30, 378
SatI GCNGC 3 cut(s) 115, 205, 309
Sau3AI GATC 6 cut(s) 18, 87, 129, 171, 282, 340
Sau96I GGNCC 1 cut(s) 331
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 3 cut(s) 230, 251, 349
SduI GDGCHC 2 cut(s) 38, 411
SfaNI GCATC 1 cut(s) 202
SfoI GGCGCC 1 cut(s) 154
SgrAI CRCCGGYG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 263
SsiI CCGC 2 cut(s) 68, 204
SspDI GGCGCC 1 cut(s) 152
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 2 cut(s) 38, 411
StyI CCWWGG 2 cut(s) 165, 303
TaiI ACGT 2 cut(s) 147, 195
TaqI TCGA 5 cut(s) 54, 60, 128, 174, 276
TasI AATT 1 cut(s) 263
TatI WGTACW 2 cut(s) 96, 177
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 30, 378
Tru9I TTAA 2 cut(s) 30, 378
TscAI CASTG 1 cut(s) 458
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 114, 308
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 458
Vha464I CTTAAG 1 cut(s) 29
XagI CCTNNNNNAGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 263
XmiI GTMKAC 2 cut(s) 60, 276
XspI CTAG 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.